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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaaatctgtccaatctgtagttttctattaaagaatatgcaagtgagggagtgattttagttcttcaatttgatttcatcattgattttatttggtgaatggctatgttaacagattattaatgtgaatatttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG

Basic information

species Vitis vinifera
transcript Vv15s0048g00800.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g14260.1 (Oryza sativa), 3'ss of exon 8
gtattgaaatctgtccaatctgtagttttctattaaagaatatgcaagtgagggagtg-attttagttcttcaatttgatttcatcattgattttatttggtgaatggctatgttaacagattattaatgtgaatatttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                                 ||  |||| |  |  ||      || |  ||  || ||  || |   ||  ||  || |||  ||   |   |  || ||   |  |||||||       | || |||||||||||||  |||||||  | |||||||| |||||||| || ||||||||||| |||||||| || ||||||||| |||| || ||||| |||||||||||||
--------------------------------gtatggaatctttacttgcacccatgtaccttgatttttacatgtagattgttc--tggtttgtttcattccttatctctgagtattgattatttgct---acatatttttcagGTCTTTGCAACAGCTTCATATGATGACCATAAAAATATTGTACTCCTGGCGTTTGAAATTATCGAGAAGATTTTGCGGGAGTACTTTCCCTACATTACTG

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G058870_T01 (Zea mays), 3'ss of exon 8
gtattgaaatctgtccaatctgtagttttctattaaagaatatg-caagtgagggagtg-attttagttcttcaatttgatttcatcattgattttatttggtgaatggctatgttaacagattattaatgtgaatatttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                                        |||| ||  |       || |   ||  ||||  || | |   | ||    |  || ||  ||     |   ||   |  ||||     | |  ||     |||||||||||  | |||||  | ||||||||||| ||||| || |||||  ||||||||||||| || || |||||| |||| || ||||| || ||||||||||
---------------------------------------gtatgacaccttcactcatgtaccataactctt--atctaaagacctctgcaacattctt--gttttcagtcctgaacatggattgccggtttacat----ctttcagGTCTTTGCGACAGCGTCATATGATGATCACAAAAATATTGTACTATTGGCCTTTGAAATTATAGAAAAGATTTTGCGGGAATACTTTCCATACATTACTG

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G45340.1 (Glycine max), 3'ss of exon 8
gtattgaaatctgtccaatctgtagttttctattaaagaatatgcaagtgagggagtgattttagttcttcaatttgatttcatcattgattttatttggtgaatggctatgttaacagattattaatgtgaatatttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                                          |  |  |||   | |  | ||   |||  |    ||||  || | ||    | |||| | | |   | | |   |   ||| |  |   |    |  |||||||| ||||||||||||||||||||||| || |||||||| |||||| | || |||||||| || ||||||||| | ||||| ||||| || ||||| ||||
-----------------------------------------gtaaagctgataaactcctattg--tctatagagagattcaattaatgcaaatgtttgttcattttttctctcctctacttactgctcatagacctgatttcagGTATTCACAACAGCAGCTTATGATGACCACAAAAACATTGTACTCTTAGCTTTTGAAATTATGGAGAAGATTATTCGAGATTACTTTCCATACATCACTG

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G02610.1 (Glycine max), 3'ss of exon 8
gtattgaaatctgtccaatctgtagttttctattaaagaatatgcaagtgagggagtgattttagttcttcaatttgatttcatcattgattttatttggtgaatggctatgttaacagattattaatgtgaata---tttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                                          |  |  |||   | |  | ||   |||  |    | ||  || | || |  | |||| || ||   | | |   |   |  ||| ||   |||    |  |||||||| |||||| |||||||||||||||| || |||||||| |||||| |||| |||||||| || ||||||||| | ||||| ||||| || ||||| ||||
-----------------------------------------gtagagctgataaactcctattg--tctatagagagcttcaattaatgctaatgtttg-tggatttttttctcctcctctacttattgctcatagacctgatttcagGTATTCACAGCAGCAGCTTATGATGACCACAAAAACATTGTACTCTTGGCTTTTGAAATTATGGAGAAGATTATTCGAGATTACTTTCCATACATCACTG

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G40480.1 (Glycine max), 3'ss of exon 8
gtattgaaatctgtccaatctgtagttttctattaaagaatatgcaagtgagggagtgattttagttcttcaatttgatttcatcattgattttatttggtgaatggctatgttaacagattattaatgtgaatatttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                                |      |  | |   |  |     |  || | ||          || |  |  |    |  | ||  |   |   ||| |  ||  |||  |  |||| |  ||  || ||||| ||||||||||| || |||||||| || |||||||| ||||||||||| |||||||| || ||||||||| | ||||| ||||| || | ||| ||||
-------------------------------gtagggctaatttctgttccgtagagggcttcaatttgcatggaaaatgtttttgtctgctgaagtttttctttcattatttctactcattgct--tgtggac-ttaattccagGTATTCACAACAGCGGCATATGATGACCACAAAAACATTGTACTCCTGGCTTTTGAAATTATGGAGAAGATTATTCGAGATTACTTTCCATGCATCACTG

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G45360.1 (Glycine max), 3'ss of exon 10
gtattgaaatctgtccaatctgtagttttctattaaagaatatgcaagtgagggagtgattttagttcttcaatttgatttcatc-attgattttatttggtgaatggctatgttaacagattattaatgtgaatatttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                           |     |||   || | | |  |||||  | | |||     |  ||  || |||  ||    ||  || ||   | | |   | |  | |  | || |  |  | |       || ||||  |||||||||||||| |||||||| || |||||||| |||||| |||| |||||||| || ||||||||| | ||||| ||||| ||  |||| ||||
--------------------------gtagggctaatttatgttccatagagggcttcaatttg--catggaaaatgtttttgtctgccgaagtttttctttcattatttctactcattgcttgtggacataa-------ttccagGCATTCACAACAGCAGCATATGATGACCACAAAAACATTGTACTCTTGGCTTTTGAAATTATGGAGAAGATTATTCGAGATTACTTTCCTCACATCACTG

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G34560.1 (Glycine max), 3'ss of exon 9
gtattgaaatctgtccaatctgtagttttctattaaagaatatgcaagtgagggagtgattttagttcttcaatttgatttcatcattgattttatttggtgaatggctatgttaacagattattaatgtgaatatttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                                          |  |  |||   | |  | ||   |||  |    | ||  || | ||  | | |||| | | |   | | |   |   ||| |  |   |    |  |||||||| ||||||||||||||||||||||| || |||||||| |||||| |  | |||||||| || ||||||||| | ||||| ||||| || ||||| ||||
-----------------------------------------gtagagctgataaactcctattg--tctatagagagcttcaattaatgcatatgtttgttcattttttctctcctctacttactgctcatagatctgatttcagGTATTCACAACAGCAGCTTATGATGACCACAAAAACATTGTACTCTTATCTTTTGAAATTATGGAGAAGATTATTCGAGATTACTTTCCATACATCACTG

upper sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 3'ss of exon 8
gtattgaaatctgtccaatctgtagttttctattaaagaatatgcaagtgagggagtgattttagttcttcaatttgatttcatcattgat-tttatttggtgaatggctatgttaacaga-ttattaatgtgaatat-ttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                                                         |  |||  | | ||||  |        | ||||| | | | |      | |||  |   | | | ||| |||  |   | |  | || ||| | ||||| ||||||||  ||||||  |||||||| || ||  ||||| | ||||||||  ||||||||||| | ||||||||||||||  |||| || |
---------------------------------------------------------gtatttgatccatcaaacttccagttacgttgatgtctctctaagttcttgctg-gcagatatacttactaaaatctgtttgctcttgcagATTTTCACGACAGCAGCACATGATGCACATAAAAATATTGTGTTCCTGTCTTTTGAAATGGTTGAGAAGATTATCCGAGACTACTTCCCACACATCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatttggtgaatggctatgttaacagattattaatgtgaatatttttttcagGTCTTCACAACAGCAGCTTATGATGATCATAAAAACATAGTACTCCTGGCCTTTGAAATAATTGAGAAGATTGTGCGAGACTACTTCCCCTACATTACTG
                               tattaat  putative branch site (score: 2)
                                           tatttttttc  putative PPT
                  tatgttaacagattat  TA-rich tract