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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtccattcatctttatttttgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG

Basic information

species Vitis vinifera
transcript Vv15s0046g03520.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os04g58580.1 (Oryza sativa), 3'ss of exon 8
gtgagtgtccattcatctt-tatttttgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG
           |    ||| |||  |       |||   |  ||| || |     | |    || || |||||    ||   ||| | |||||| ||||| |||||||||||||| || |||||||||||||| ||||| || ||||  |||||||| |||||||| || ||||| ||| ||
----------gtaagccttctatcctcatacaaatgtgccagaaattattggtt-tcatgatatttactgctg----tatcactt-taacagGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAG

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os04g58580.2 (Oryza sativa), 3'ss of exon 8
gtgagtgtccattcatctt-tatttttgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG----------
           |    ||| |||  |       |||   |  ||| || |     | |    || || |||||    ||   ||| | |||||| ||||| |||||||||||||| || |||||||||||||| ||||| || ||||  |||||||| |||||||| || ||||| ||| ||          
----------gtaagccttctatcctcatacaaatgtgccagaaattattggtt-tcatgatatttactgctg----tatcactt-taacagGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGTGATATGTA

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G165535_T05 (Zea mays), 3'ss of exon 9
gtgagtgtcc--attcatctttatttttgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG
|||||| |||     || |  ||  | |  ||   |  ||  ||   | | |   |||||   || || |  ||    |||    |    ||||| || |||||||| |||||||| || || ||||||||||| ||||| || ||||  |||||||| |||||||| ||||| || ||| ||
gtgagtctcctagaccaccagtacatgtatttattttcttgaaatgattgaaatcatgac---atttactaatgccactaaaaaattc--cagGTATTTCCCCAAGGTTGGGACAAAACTTATTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGATAAGACCTACAAG

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G39800.1 (Glycine max), 3'ss of exon 9
gtgagtgtccattcatctttatttt-tgctttgatgattcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG
    ||    | | || || ||    || | |  |||||  |    | ||    || | | ||   ||   |  |   |||        ||||||||||| ||||| |||||||| ||||||||| ||||||||||||||| |||   |||||| ||||||||||| || ||||| ||| ||
----gtaagtaataattttcatggcatgatgtagtgattttatttttggtg---ataagtcaacagatc-ttaatttaaatatactccccagGTTTTCCCTCAAGGTTGGGACAAAACATACTGCCTGAGATACCTTGATGGTTTCAATGAAATTCACTTCTTTGGTGACAAAACTTACAAG

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G46390.1 (Glycine max), 3'ss of exon 9
gtgagtgtccattcatctttatttt-tgctttgatgattcgaaaactagtat--caatgactgaatgtattgctggtcataatgcttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG
    ||    | | || || ||    || | || |||||  |    |  ||     ||   | ||    |  ||  |   |||       |||||||||||| ||||| |||||||| ||||||||| ||||||| ||||||| |||   |||||| |||||||| || || ||||| ||| | 
---tgtaagtaatgattttcatgacatgatgtggtgattttatttttgataaagtgatagttcaacaggtc-ctaatttaaatatactccacaGGTTTTCCCTCAAGGTTGGGACAAAACATACTGCCTGAGATATCTTGATGGTTTCAATGAAATTCACTTCTTCGGTGACAAAACTTACAA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415834|gb|EC981772.1|EC981772
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351037054|gb|FQ465046.1|FQ465046
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|30255051|gb|CB971498.1|CB971498
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACGAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110701264|gb|EE078642.1|EE078642
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351014077|gb|FQ434229.1|FQ434229
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATGCTGCTTTGAGATACCTTTGA-G
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTT-GAGATACCTT-GATG
EST: gi|71870941|gb|DT019996.1|DT019996
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|22015208|gb|BQ800242.1|BQ800242
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351029490|gb|FQ436884.1|FQ436884
EST:     TGCTCACCTAAACCCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCGGGGACAAGACATACCGCTTGAAATACCTTGATGA
genomic: TGCTCACCTAAACC-TGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGA
EST: gi|30254563|gb|CB971308.1|CB971308
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110722626|gb|EE099031.1|EE099031
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110689404|gb|EE065600.1|EE065600
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|71867011|gb|DT016066.1|DT016066
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351052425|gb|FQ452458.1|FQ452458
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110693362|gb|EE069529.1|EE069529
EST:     TGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|30253435|gb|CB970986.1|CB970986
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110369745|gb|EC933913.1|EC933913
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110377595|gb|EC942672.1|EC942672
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|30296186|gb|CB972980.1|CB972980
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGAGATCTAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110374344|gb|EC939025.1|EC939025
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349826399|gb|FQ417896.1|FQ417896
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349822047|gb|FQ408376.1|FQ408376
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGGCTGG-ACAAGACATAACGGCTTGACAAACCTTGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGG-CTGGGACAAGACATA-CTGCTTGAGATACCTTGAT
EST: gi|30253357|gb|CB970908.1|CB970908
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351056098|gb|FQ453560.1|FQ453560
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349808339|gb|FQ405483.1|FQ405483
EST:     TTGCTCACCTAAACCTGAAATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAAATACCTTGAAGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|30254481|gb|CB971226.1|CB971226
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGAACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|156736254|gb|EV240375.1|EV240375
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110388071|gb|EC952787.1|EC952787
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349824204|gb|FQ417591.1|FQ417591
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTTGAGATACCTTGATGA
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTT-GAGATACCTTGATGA
EST: gi|351019470|gb|FQ429605.1|FQ429605
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|27579428|gb|CB002123.1|CB002123
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|33408487|gb|CF214114.1|CF214114
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|27580564|gb|CB003259.1|CB003259
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110384439|gb|EC948876.1|EC948876
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|32246999|gb|CD712818.1|CD712818
EST:     TGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351053383|gb|FQ455719.1|FQ455719
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|77584263|gb|DV221204.1|DV221204
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110708707|gb|EE086556.1|EE086556
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAAGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|351019263|gb|FQ429423.1|FQ429423
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|71867285|gb|DT016340.1|DT016340
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|34364395|gb|CF405980.1|CF405980
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|349833445|gb|FQ420191.1|FQ420191
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|161717186|gb|FC064703.1|FC064703
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|33406828|gb|CF212455.1|CF212455
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|27579427|gb|CB002122.1|CB002122
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110400084|gb|EC966626.1|EC966626
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110725007|gb|EE101335.1|EE101335
EST:     ATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: ATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|33406730|gb|CF212357.1|CF212357
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|33410547|gb|CF216174.1|CF216174
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
EST: gi|110707835|gb|EE084684.1|EE084684
EST:     TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGAT                         GTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT
genomic: TTGCTCACCTAAACCTGACATTTTCTATTGGAGGACAAATAAGCTTTGATgtgagtgtcc ... cttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgaaaactagtatcaatgactgaatgtattgctggtcataatgcttgtgacagGTTTTCCCCCAAGGCTGGGACAAGACATACTGCTTGAGATACCTTGATGATTTTCCTGAAATCCACTTCTTTGGCGATAAAACATACGAG
                        aatgtatt  TA-rich tract