Sequence
atgc intronic sequence ATGC exonic sequence...ttcatggccataaaccttaaaccgatcctaatatttctcaaggtatttgatgttaacattaacaaatggattgatagtatatataaatatgtttttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G01210.1 (Glycine max), 3'ss of exon 8
ttcatggccataa-accttaaaccgatcctaatatttctcaaggtatttgatgttaacattaacaaatggattgatagtatatataaatatgt-ttttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCT
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atcatacttacaccatgtttttttcactacaa-atttatttgtgtgctttagcttataattaataaaaaaattatacata-gtatgaacatttcttttccagTGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTTCAAGGAAAGTGGATGGAATTCAAAAAGGAAATGTCATATTCACTCTGAT
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G07770.2 (Glycine max), 3'ss of exon 8
ttcatggccataa-accttaaaccgatcctaatatttctcaaggtatttgatgttaacattaacaaatggattgatagtatatataaatatgt-ttttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCT
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atcatacttataccatgttttttctactacaa-atttatttgtgtgctttagcttataattaataaacaaattatacata-gtatgaatatttcttttccagTGCCAATTACATATCAAATTCACCGTCTCCGTGATGGAAAGAGCTTCGCTTCAAGGAAAGTGGATGGAATTCAAAAGGGAAATGTCATATTCACTCTGAT
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G46610.1 (Glycine max), 3'ss of exon 8
ttcatggccataaaccttaaaccgatcctaatatttctcaaggtatttgatgttaacattaacaaatgga--ttgatagtatatataaatatgtt-tttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCT-
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----tgatgcaaaagaatgaagaaattaaggattatttactgctaattcatttgtttgtcagctaacaatattttataaccattgtaaacttttggtttccagtACCCATTATATATCAAGTTAAGCGTCTCCGTGATGGGAAGAGTTTTGCTACTAGGAAAGTGGATGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTG
upper sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G01710.1 (Arabidopsis thaliana), 3'ss of exon 8
-------------ttcatggccataaaccttaaaccgatcctaatatttctcaaggtatttgatgttaacattaacaaatggattgatagtat-atataaatatgtt-------tttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCT
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gtatgtacataatctcactggggcactttctag-ccaccaatgatgcctttcttccctattgaaacccaccctg-ctgttggattcatctgattatcatagtttgttgctcttgcttgcagTCCCCATTATTTATCAAGTTCACCGCATACGTGATGGGAACAACTTTGCCACCCGAAGAGTTGATGCAGTACAGAAAGGAAATATCATATTCATCTTGCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720865|gb|FC070980.1|FC070980EST: GGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA TGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTA
genomic: GGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACAgtaagtgctt ... gtttttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgatgttaacattaacaaatggattgatagtatatataaatatgtttttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCT
tgttttt CT-rich tract
attgatagtatatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcatggccataaaccttaaaccgatcctaatatttctcaaggtatttgatgttaacattaacaaatggattgatagtatatataaatatgtttttgcagTGCCAATTATATATGAAGTTCGCCGTTTACGTGATGGTAAGAGCTTTGCTACGCGGAGAGTGGATGCAATACAGAAAGGAAATGTCATATTCACACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-tcatggc
- - - - -ataaacc
- - - - - - - - - aaaccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaata