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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagaccttgttctaactttaatatctatgctctttcagGACAAAGAATTGCTTGAGATCTTGCAGCTGCTATTGCCTATCATATATGGTGTTATAGAAACTGTTGTTCTATCTCAGACGTATGTACGCACTCTTGTGG

Basic information

species Vitis vinifera
transcript Vv15s0046g02510.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G07710.1 (Glycine max), 3'ss of exon 2
gtattgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagaccttgttctaactttaatatctatgctctttcagGACAAAGAATTGCTTGAGATCTTGCAGCTGCTATTGCCTATCATATATGGTGTTATAGAAACTGTTGTTCTATCTCAGACGTATGTACGCACTCTTGTGG
||||| |    |  |  |||        |    | || | ||||   || |   ||  |   ||     ||     ||| ||||    | ||| |     || |     ||    ||| | |  ||   || ||| |  | |||||||| |||||  |||||||| | | ||||||| |||||||||| ||||||||| || |||||||| |||| |||||||| || ||||||||||||||||  |
gtatttacc-ttctacatca--------atttgcatttaataag---tacaacgtgctcatgaaactcaaagtgtgatgtatata---tctttcactgatttcaaccttcatgttttgattt--ctcacatttctgtaat-tttcagGAAAAAGATCTGCTTGAGGTTTGGCAGCTGTTATTGCCTATAATATATGGTTTTTTAGAAACTATTGTCCTATCTCAAACTTATGTACGCACTCTTGCTG

upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G39550.1 (Glycine max), 3'ss of exon 3
gtattgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagacct--tgttctaactttaat-atctatgctc-tttcagGACAAAGAATTGCTTGAGATCTTGCAGCTGCTATTGCCTATCATATATGGTGTTATAGAAACTGTTGTTCTATCTCAGACGTATGTACGCACTCTTGTGG
                                   |||  ||  |    |||| |||| ||  || |   | |   |  | | |  ||| |||  | |  |  |      |||| |   ||| | | |||    |  | ||||| |||||||| ||| ||||||||||||| | ||||||||||||||||||  |||||||  || |||||| ||||||||||||||| || ||||| |  |||||||  |
-------------------------------gtgattgcatataagaagtattgtgtgttcatagaaaataaactgagtattttatattttttgctgatttcaatcctttagacttaaggttttgatttttcccacttctgctcctttcagGAAAAACAATTGCTTGAGATTTGGCAGCTGCTATTGCCTATTGTATATGGCTTTTTAGAAATTGTTGTTCTATCTCAAACATATGTTCATACTCTTGCTG

upper sequence: Vv15s0046g02510.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G46700.1 (Glycine max), 3'ss of exon 3
gtattgattacttcatgtcatgtttatgacccacgttgagtaagatgtatattatgtgctccaagtaggaacaacaatgaatattgattattttatcacgttgagatagcagaccttgttctaactttaatatctatgctctttcagGACAAAGAATTGCTTGAGATCTTGCAGCTGCTATTGCCTATCATATATGGTGTTATAGAAACTGTTGTTCTATCTCAGACGTATGTACGCACTCTTGTGG
                       | ||  |  |     |||    ||| | | |||      ||            ||   | ||| | |||| |   | || |||   |||   ||| | |   |   |  |||   | ||||||||| ||| ||||||||||||| | ||||||||||||||||||  |||||||  || ||||||                                       
----------------------gtgattgcatataagaagtcttgtgtgt-tcatggaaattaaacttagtattttatatcttttgctgatttcaatccttt-agACTTCAGGTTTTGATTT--TTCCCACTTCTGCTC-CTTTCAGGAAAAACAATTGCTTGAGATTTGGCAGCTGCTATTGCCTATTGTATATGGATTTTTAGAAA---------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcacgttgagatagcagaccttgttctaactttaatatctatgctctttcagGACAAAGAATTGCTTGAGATCTTGCAGCTGCTATTGCCTATCATATATGGTGTTATAGAAACTGTTGTTCTATCTCAGACGTATGTACGCACTCTTGTGG
                                            tgctctttc  CT-rich tract
                             taactttaatatctat  TA-rich tract