Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaaaaaaaaactatctaattttatgggtggttgtgaatttgcaaagtttcgagttgcataatgaatcagagaattgtgatggaacatttattcttcatgcatttttaagtgataaaatgacaaacagCTTTCTACAGTACGAGAGCTCTCTATCATGACTGCAAAGACCCATCCTTCAGCGATGCGTTTTATCCCTGATCAGCTTCCAAGAGAGTACATCTCAAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 8
gtaaaaaaaaaaaactatctaattttatgggtggttgtgaatttgcaaagtttcgagttgcataatgaatcagagaattgt--gatggaacatttattcttcatgcattttt-aagtgataaaatgacaaacagCTTTCTACAGTACGAGAGCTCTCTATCATGACTGCAAAGACCCATCCTTCAGCGATGCGTTTTATCCCTGATCAGCTTCCAAGAGAGTACATCTCAAAGA
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gtaaatgcatacttgcacatagtttttctacttttttttgtctc---aaatgttatgctccattttttatttgaaatttcttcgataaagcctgcattgtt-atacattttttaagtgataacatgacaaacagCTTTCTGCAGTACGAGAACTTTCAATTATGACTGCCAAGAGCCATCCTGCAGCAATGCGATTCATTCCTGATCAACTTCCAAGAGAATCTATTTCAAACA
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 8
gtaaaaaaaaaaaactatctaattttatgggtggttgtgaatttgcaaagtttcgagttgcataatgaatcagagaattgtgatggaacatttattcttcatgcattttt-aagtgataaaatgacaaacagCTTTCTACAGTACGAGAGCTCTCTATCATGACTGCAAAGACCCATCCTTCAGCGATGCGTTTTATCCCTGATCAGCTTCCAAGAGAGTACATCTCAAAGA
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gtaaatgcatactttcacatagtttttc---tacttctttgtct-catgttctgttccttttttttatttgaaatttcttcgataaagcctgcatcgtt-atacattttttaagtgataacatgacaaacagCTTTCTGCAGTACGAGAACTTTCAATTATGACTGCCAAGAGCCATCCTGCAGCAATGCGATTCATTCCTGATCAATTTCCAAGAGAATCTATTTCAAACA
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaaaaaaaaaaaactatctaatt-ttatgggtggttgtgaatttgcaaagtttcgag----ttgcataatgaatcagagaattgtga-tggaacatttattcttcatgcatttttaagtgataaaatgacaaacagCTTTCTACAGTACGAGAGCTCTCTATCATGACTGCAAAGACCCATCCTTCAGCGATGCGTTTTATCCCTGATCAGCTTCCAAGAGAGTACATCTCAAAGA
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--------------gtagttagttattccggttcatttcttctctgcatcattttcagtaaattatactttttaacttccaaatgtgaacgcttgagttgcttttcatgcaccttaaagtgattaaatgacaaacagCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGCGATTTGTTCCTGATCAGCACCCGAGAGAAGGCGAATTGGATG
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 8
gtaaaaaaaaaaaactatctaatt-ttatgggtggttgtgaatttgcaaagtttcgag----ttgcataatgaatcagagaattgtga-tggaacatttattcttcatgcatttttaagtgataaaatgacaaacagCTTTCTACAGTACGAGAGCTCTCTATCATGACTGCAAAGACCCATCCTTCAGCGATGCGTTTTATCCCTGATCAGCTTCCAAGAGAGTACATCTCAAAGA
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--------------gtagttagttatttcggttcatttcttctctgcatcattttcagtaaattatactttttaactttcaaatgtgagcgcttgagttgcttttcatgcaccttaaagtgattaaatgacaaacagCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGGGATTTGTTCCTGATCAGCACCTGAGAGAAGGCGAATTGGATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtgatggaacatttattcttcatgcatttttaagtgataaaatgacaaacagCTTTCTACAGTACGAGAGCTCTCTATCATGACTGCAAAGACCCATCCTTCAGCGATGCGTTTTATCCCTGATCAGCTTCCAAGAGAGTACATCTCAAAGA
atttttaagtgataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaaaaaaaaactatctaattttatgggtggttgtgaatttgcaaagtttcgagttgcataatgaatcagagaattgtgatggaacatttattcttcatgcatttttaagtgataaaatgacaaacagCTTTCTACAGTACGAGAGCTCTCTATCATGACTGCAAAGACCCATCCTTCAGCGATGCGTTTTATCCCTGATCAGCTTCCAAGAGAGTACATCTCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA