Sequence
atgc intronic sequence ATGC exonic sequence...tactagtatacatttctgtgtatgtgcgtattgctgttagttttattaacttggagcaagttttatagactaaccctttatcttgatatgacttatccagATGGAATTATGCATTATGCTGTTGGAATGCTGCAGTCAAGAGAGAACTTACCTCCGCTATTATGGTCTTCTGGGGCAGCGGTTTTGCATGATCAACAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0045g01110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G24660.1 (Glycine max), 3'ss of exon 5
tactagtatacat-ttctgtgtatgtgcgtattgctgttagttttattaacttggagcaagttttatagactaaccctttatcttgatatgacttatc-cagATGGAATTATGCATTATGCTGTTGGAATGCTGCAGTCAAGAGAGAACTTACCTCCGCTATTATGGTCTTCTGGGGCAGCGGTTTTGCATGATCAACAAAG
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tctttacatagttactcagattgaacattcatttccaacatctgatttatcattctccactagttaccttttaat--tacaattttgtataattggttgcagATGGAATTGTGCATTATGCTTTTGGAATGTTGCAGCCAAGAGAGAACTTATCTTCGATATTATGGTCTTCTGGGGCAGCGTTTCTGCATGATCAACAAAG
upper sequence: Vv15s0045g01110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G41440.2 (Glycine max), 3'ss of exon 8
--tactagtatacatttctgtgtatgtgcgtattgctgttagttttattaacttggagcaagttttatagactaaccctttatcttga-tatgacttat---ccagATGGAATTATGCATTATGCTGTTGGAATGCTGCAGTCAAGAGAGAACTTACCTCCGCTATTATGGTCTTCTGGGGCAGCGGTTTTGCATGATCAACAAAG
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gctaagattgaacattcatttcaa-----gcatctgttttatcattctccgtttggt-caagttatacctgttaattacttaaaataactatgattttggtgacagATGGAATTGTGCATTATGCTTTTGGAATGTTGTAGCCAAGAGAGAACCTATCTCAGATATTATGGTCTTCTGGGGCAGCGTTTCTGCATGATCAACAAAG
upper sequence: Vv15s0045g01110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G14770.1 (Glycine max), 3'ss of exon 7
tact-agtatacatttctgtgtatgtgcgtattgctgttagttttattaacttggagcaagttttatagactaaccctttatcttgatatgacttat---ccagATGGAATTATGCATTATGCTGTTGGAATGCTGCAGTCAAGAGAGAACTTACCTCCGCTATTATGGTCTTCTGGGGCAGCGGTTTTGCATGATCAACAAAG
|||| || | | | | | | || | ||| || | ||| |||||| || ||| ||| | || | || |||||||| || ||||||||||| |||||||| ||||| ||||||||||| || ||||| |||||||||||| |||||||||| || |||||||| |||||||
tactcagattgaacattcatttcca---gcatctgttttatcattctccgtttgtt-caagttatacctgttaattacttaaataattacaattttggtgacagATGGAGTTGTGCATTATGCTTTTGGAATGTTGCAGCCAAGAGAGAACCTATCTCCGATATTATGGTCTTTTGGGGCAGCGTTTCTGCATGATTAACAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaacttggagcaagttttatagactaaccctttatcttgatatgacttatccagATGGAATTATGCATTATGCTGTTGGAATGCTGCAGTCAAGAGAGAACTTACCTCCGCTATTATGGTCTTCTGGGGCAGCGGTTTTGCATGATCAACAAAG
cttatcc CT-rich tract
aagttttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tactagtatacatttctgtgtatgtgcgtattgctgttagttttattaacttggagcaagttttatagactaaccctttatcttgatatgacttatccagATGGAATTATGCATTATGCTGTTGGAATGCTGCAGTCAAGAGAGAACTTACCTCCGCTATTATGGTCTTCTGGGGCAGCGGTTTTGCATGATCAACAAAG
- - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -tggagca