1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcacaaatatgtggatcttaataggcatataattttaagaactagtgcagcagttttgtttataccatccgcttatacaaatttgtatgttattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTGAGCATGAGTACTTCAAAGATATTGGGTTTGTGCCCTGATTGCATGTGT
species | Vitis vinifera |
transcript | Vv15s0045g00310.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|22013045|gb|BQ798079.1|BQ798079
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|46918582|gb|CN547911.1|CN547911
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|110376567|gb|EC941627.1|EC941627
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|110360550|gb|EC923749.1|EC923749
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|71889466|gb|DT038521.1|DT038521
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|22011236|gb|BQ796270.1|BQ796270
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|110422498|gb|EC988823.1|EC988823
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|110427638|gb|EC994087.1|EC994087
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTTGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTEST: gi|28967267|gb|CB346300.1|CB346300
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
EST: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCT AAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
genomic: TTGCAACTGTTGTCCCAAATCTCGAATCAGCTGGCATTGATCTCCTTTCTgtaagttcag ... tattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTT
tgcagcagttttgtttataccatccgcttatacaaatttgtatgttattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTGAGCATGAGTACTTCAAAGATATTGGGTTTGTGCCCTGATTGCATGTGT
ttattttcc CT-rich tract
ttatacaaatttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacaaatatgtggatcttaataggcatataattttaagaactagtgcagcagttttgtttataccatccgcttatacaaatttgtatgttattttccagAAAATGCTGTGCCTGGATCCCAGCAGAAGAATAACTGCCAGGAGTGCTCTTGAGCATGAGTACTTCAAAGATATTGGGTTTGTGCCCTGATTGCATGTGT
-cacaaat
- - - - - - - - - - - - - - - - - - aagaacta
- - - - - - - - - - - - - - - - - - - - - - -tgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt