1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctttatgtcatttgactgttaaagtaaatttgtaattttgatgggataaaacatgacattattttgtaataatgcctcgttattctgcatccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTTGGATCATCTGATACCATAGCTGGTCAGCCCTCTCCAGTCACGAGAATAA
species | Vitis vinifera |
transcript | Vv15s0024g01470.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAG TTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTTEST: gi|110700983|gb|EE078116.1|EE078116
genomic: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAGgtattccaat ... tccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTT
EST: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAG TTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTTEST: gi|110383268|gb|EC947629.1|EC947629
genomic: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAGgtattccaat ... tccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTT
EST: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAG TTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTTEST: gi|110373786|gb|EC938134.1|EC938134
genomic: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAGgtattccaat ... tccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTT
EST: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAG TTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTTEST: gi|110375221|gb|EC940185.1|EC940185
genomic: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAGgtattccaat ... tccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTT
EST: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAG TTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTTEST: gi|110377618|gb|EC942697.1|EC942697
genomic: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAGgtattccaat ... tccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTT
EST: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAG TTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTT
genomic: TTGGACCAGCTGCCAATCGCTTGTTGGAGGCGTACAAGATGCTTTTGAAGgtattccaat ... tccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTT
gataaaacatgacattattttgtaataatgcctcgttattctgcatccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTTGGATCATCTGATACCATAGCTGGTCAGCCCTCTCCAGTCACGAGAATAA
atgacattattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttatgtcatttgactgttaaagtaaatttgtaattttgatgggataaaacatgacattattttgtaataatgcctcgttattctgcatccatggcagTTCTTAGGGAACTTGAGGAATCTCCGAGACTCGCATGCAGCCGTGGCTGTTGGATCATCTGATACCATAGCTGGTCAGCCCTCTCCAGTCACGAGAATAA
- - - - - - -tgactgt
- - - - - - - - - - - aagtaaa
- - - - - - - - - - - - - - - - - - - - - - ggataaa
- - - - - - - - - - - - - - - - - - - - - - - - - -acatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgca