1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaacatccattttgatagcttatcaagtcttattcctgtgtttgcacattaagatggtcctttcagtaaattatgtgaaaataattgtttgtgattgcagCATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTCAAACAGCTGCAAGGCTATTGCTCTTCTTGCAGGGCAAACTGCGGAAGTT
species | Vitis vinifera |
transcript | Vv15s0024g00850.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTACAGGTGAGACCATGCAAATGACAAGTACATCTGAGCAACGTGTCAG CATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTCEST: gi|351026788|gb|FQ436441.1|FQ436441
genomic: GTTACAGGTGAGACCATGCAAATGACAAGTACATCTGAGCAACGTGTCAGgtatgctgct ... gtgattgcagCATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTC
EST: GTTACAGGTGAGACCATGCAAATGACAAGTACATCTGAGCAACGTGTCAG CATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTCEST: gi|351040061|gb|FQ425147.1|FQ425147
genomic: GTTACAGGTGAGACCATGCAAATGACAAGTACATCTGAGCAACGTGTCAGgtatgctgct ... gtgattgcagCATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTC
EST: GTTACAGGTGAGACCATGCAAATGACAAGTACATCTGAGCAACGTGTCAG CATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTC
genomic: GTTACAGGTGAGACCATGCAAATGACAAGTACATCTGAGCAACGTGTCAGgtatgctgct ... gtgattgcagCATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTC
acattaagatggtcctttcagtaaattatgtgaaaataattgtttgtgattgcagCATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTCAAACAGCTGCAAGGCTATTGCTCTTCTTGCAGGGCAAACTGCGGAAGTT
taaattatgtgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacatccattttgatagcttatcaagtcttattcctgtgtttgcacattaagatggtcctttcagtaaattatgtgaaaataattgtttgtgattgcagCATGGAATATTATTTGCAGAAGACATACTACAAGACTGCATCTTTGATTTCAAACAGCTGCAAGGCTATTGCTCTTCTTGCAGGGCAAACTGCGGAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- acatcca
- - - - - - - - - - - tcaagtc
- - - - - - - - - - - - - - - - ttcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa