1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taataattgtaagttccataaatgttcctatagaaggaaaggtttttttttacactacttccatttccattgctagatcactaacattaattcttgtcagGCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACTTCAGAGCATGGATCAATGGGTCCAAAATTCTGGATGAGTTAATCTTTCT
species | Vitis vinifera |
transcript | Vv15s0021g02200.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCGAATTTTAAACAATCAACTAAGCTCTCTAATGTGGATTGATGAAAAG GCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACTEST: gi|34416501|gb|CF415255.1|CF415255
genomic: TACGAATTTTAAACAATCAACTAAGCTCTCTAATGTGGATTGATGAAAAGgtaagtatca ... ttcttgtcagGCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACT
EST: TCCGAATTTTAAACAATCAACTAAGCTCTCTAATGTGGATTGATGAAAAG GCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACTEST: gi|110378544|gb|EC943681.1|EC943681
genomic: TACGAATTTTAAACAATCAACTAAGCTCTCTAATGTGGATTGATGAAAAGgtaagtatca ... ttcttgtcagGCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACT
EST: TCCGAATTTTAAACAATCAACTAAGCTCTCTAATGTGGATTGATGAAAAG GCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACT
genomic: TACGAATTTTAAACAATCAACTAAGCTCTCTAATGTGGATTGATGAAAAGgtaagtatca ... ttcttgtcagGCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACT
ttttttacactacttccatttccattgctagatcactaacattaattcttgtcagGCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACTTCAGAGCATGGATCAATGGGTCCAAAATTCTGGATGAGTTAATCTTTCT
ttcttgtc CT-rich tract
taacattaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataattgtaagttccataaatgttcctatagaaggaaaggtttttttttacactacttccatttccattgctagatcactaacattaattcttgtcagGCTCAAGAATTTAACTCGCGCATTCAGAAGCTTGCCAGTCAAGGTTCTACTTCAGAGCATGGATCAATGGGTCCAAAATTCTGGATGAGTTAATCTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - -ccataaa
- - - - - - - - - - - - - - - - -aaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactaac