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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctccattttttaatcttcaacttcttccacccaccccacatgcagctgtttgtaagaatttgattgagagataattatgattatcctgtggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAATTCAAAGGAAATGCTTGAAAGACATTTAAAAGCGACAGGTGAAAGAGTTT

Basic information

species Vitis vinifera
transcript Vv15s0021g01230.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035456|gb|FQ463301.1|FQ463301
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351016500|gb|FQ423927.1|FQ423927
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351016499|gb|FQ423926.1|FQ423926
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351025032|gb|FQ433449.1|FQ433449
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351034412|gb|FQ463225.1|FQ463225
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351033348|gb|FQ446580.1|FQ446580
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCCGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351027650|gb|FQ446817.1|FQ446817
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351024489|gb|FQ426298.1|FQ426298
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|352790073|gb|FQ479683.1|FQ479683
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351046338|gb|FQ448643.1|FQ448643
EST:     AAGAACTTAATTCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351054204|gb|FQ450286.1|FQ450286
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351019825|gb|FQ439642.1|FQ439642
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351039502|gb|FQ461369.1|FQ461369
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351026622|gb|FQ436275.1|FQ436275
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|349833020|gb|FQ416398.1|FQ416398
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|352789985|gb|FQ479595.1|FQ479595
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351033263|gb|FQ462035.1|FQ462035
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAGATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351040162|gb|FQ425248.1|FQ425248
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCTACCTGAGGAAAACTTCCAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351054398|gb|FQ450481.1|FQ450481
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351037106|gb|FQ456939.1|FQ456939
EST:     AAGAACTTACTCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|349832664|gb|FQ422022.1|FQ422022
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351056659|gb|FQ443286.1|FQ443286
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351028040|gb|FQ425941.1|FQ425941
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351043435|gb|FQ451487.1|FQ451487
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351042076|gb|FQ456286.1|FQ456286
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351034920|gb|FQ458277.1|FQ458277
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351046877|gb|FQ454487.1|FQ454487
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGCGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351035498|gb|FQ463343.1|FQ463343
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351031204|gb|FQ445031.1|FQ445031
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351022167|gb|FQ438752.1|FQ438752
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351051825|gb|FQ455239.1|FQ455239
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|349815577|gb|FQ400733.1|FQ400733
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACCTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351036533|gb|FQ457246.1|FQ457246
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351052468|gb|FQ452501.1|FQ452501
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|349827622|gb|FQ422490.1|FQ422490
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351024264|gb|FQ423687.1|FQ423687
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351025469|gb|FQ435161.1|FQ435161
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351025913|gb|FQ427925.1|FQ427925
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351044016|gb|FQ431447.1|FQ431447
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|349828962|gb|FQ419295.1|FQ419295
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|352798342|gb|FQ480367.1|FQ480367
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351016726|gb|FQ424153.1|FQ424153
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351026266|gb|FQ428278.1|FQ428278
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351014382|gb|FQ437384.1|FQ437384
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|349823406|gb|FQ423217.1|FQ423217
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351025836|gb|FQ427848.1|FQ427848
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|349830206|gb|FQ420466.1|FQ420466
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351039874|gb|FQ464912.1|FQ464912
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|349819006|gb|FQ411701.1|FQ411701
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351036393|gb|FQ458768.1|FQ458768
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351042077|gb|FQ456287.1|FQ456287
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
EST: gi|351037820|gb|FQ464261.1|FQ464261
EST:     AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAG                         GTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT
genomic: AAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaact ... ggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtttgtaagaatttgattgagagataattatgattatcctgtggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAATTCAAAGGAAATGCTTGAAAGACATTTAAAAGCGACAGGTGAAAGAGTTT
             atttgat  putative branch site (score: 5)
                                                ttctc  putative PPT
                        agataattatgattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctccattttttaatcttcaacttcttccacccaccccacatgcagctgtttgtaagaatttgattgagagataattatgattatcctgtggattctcagGTGCATACTGAAATATTTTTTAGTGATCGCCCTGTCTTGCGGCCTTGCAATTCAAAGGAAATGCTTGAAAGACATTTAAAAGCGACAGGTGAAAGAGTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
cctccat
- - - - - - - - - caacttc
- - - - - - - - - - - - - - - cccaccc
- - - - - - - - - - - - - - - - - - -cacatgc
- - - - - - - - - - - - - - - - - - - - - - - ctgtttg