1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agccattctcaattatgaccttttccctagattgagtggtgttattttggggactaaattgatgaaattttatctttgtttctttccgtctttcttatagATTCCAGCAACGCATCATGAGTCACCTAAACCTGGAAGAAAGCCCACTACCAGCGCAGTGCATCCTCAGTCACCCAAACCTGGACGAAAGCTCACTACCA
species | Vitis vinifera |
transcript | Vv14s0219g00090.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGACTTTTACAAGGAAAGAGAGACACTCAAGGGCCAGACTAAGAAG ATTCCAGCAACGCATCATGAGTCACCTAAACCTGGAAGAAAGCCCACTACC
genomic: TGCCTGACTTTTACAAGGAAAGAGAGACACTCAAGGGCCAGACTAAGAAGgtatctcttt ... tttcttatagATTCCAGCAACGCATCATGAGTCACCTAAACCTGGAAGAAAGCCCACTACC
tttggggactaaattgatgaaattttatctttgtttctttccgtctttcttatagATTCCAGCAACGCATCATGAGTCACCTAAACCTGGAAGAAAGCCCACTACCAGCGCAGTGCATCCTCAGTCACCCAAACCTGGACGAAAGCTCACTACCA
ttttatctttgtttct CT-rich tract
taaattgatgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccattctcaattatgaccttttccctagattgagtggtgttattttggggactaaattgatgaaattttatctttgtttctttccgtctttcttatagATTCCAGCAACGCATCATGAGTCACCTAAACCTGGAAGAAAGCCCACTACCAGCGCAGTGCATCCTCAGTCACCCAAACCTGGACGAAAGCTCACTACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- ccattct
- - - - - - - - - - - - - - - - - agtggtg
- - - - - - - - - - - - - - - - - - - - - - ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga