1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagagtaaagaagaaaattatttgctgttagttttgggtaccatctcactgatcaccctgtttaacattttagGGGAGAGTTTAACTGATAGGCAGGTATCCCCTGAGAAGCTCTACAGGGCTGCTGTATTGAAGAATCGATTTGCTGATACCATTTTTAAAGCTCGAGAAAA
species | Vitis vinifera |
transcript | Vv14s0171g00380.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACTTCCCAGCAAAAGCCAAACTATGTTGAGTCAGATAGCCAGCAAGATG GGGAGAGTTTAACTGATAGGCAGGTATCCCCTGAGAAGCTCTACAGGGCTGEST: gi|87585678|gb|DY474299.1|DY474299
genomic: GACTTCCCAGCAAAAGCCAAACTATGTTGAGTCAGATAGCCAGCAAGATGgtaagagtaa ... aacattttagGGGAGAGTTTAACTGATAGGCAGGTATCCCCTGAGAAGCTCTACAGGGCTG
EST: CAGATAGCCAGCAAGATG GGGAGAGTTTAACTGATAGGCAGGTATCCCCTGAGAAGCTCTACAGGGCTG
genomic: CAGATAGCCAGCAAGATGgtaagagtaa ... aacattttagGGGAGAGTTTAACTGATAGGCAGGTATCCCCTGAGAAGCTCTACAGGGCTG
tatttgctgttagttttgggtaccatctcactgatcaccctgtttaacattttagGGGAGAGTTTAACTGATAGGCAGGTATCCCCTGAGAAGCTCTACAGGGCTGCTGTATTGAAGAATCGATTTGCTGATACCATTTTTAAAGCTCGAGAAAA
gtttaac putative branch site (score: 3)
tgtttaacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtaaagaagaaaattatttgctgttagttttgggtaccatctcactgatcaccctgtttaacattttagGGGAGAGTTTAACTGATAGGCAGGTATCCCCTGAGAAGCTCTACAGGGCTGCTGTATTGAAGAATCGATTTGCTGATACCATTTTTAAAGCTCGAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT