1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtactctctgctgtatagcttatcaaaattcttcacttgactagatgtcttaaaaagtatcaaagatggctgcttcttgaattttattttcagGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTCACTCCAACAG
species | Vitis vinifera |
transcript | Vv14s0171g00090.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTG GTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTCEST: gi|22009982|gb|BQ795016.1|BQ795016
genomic: AAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTGgtactctctg ... ttattttcagGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTC
EST: AGATCGTCTTATTCGACTG GTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTCEST: gi|110701989|gb|EE080193.1|EE080193
genomic: AGATCGTCTTATTCGACTGgtactctctg ... ttattttcagGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTC
EST: AAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTG GTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTCEST: gi|37190189|gb|CF609538.1|CF609538
genomic: AAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTGgtactctctg ... ttattttcagGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTC
EST: AAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTG GTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTC
genomic: AAATATCAAAGCATGATTTTGTTTTCTATTCAGATCGTCTTATTCGACTGgtactctctg ... ttattttcagGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTC
gactagatgtcttaaaaagtatcaaagatggctgcttcttgaattttattttcagGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTCACTCCAACAG
acttgac putative branch site (score: 4)
ttttattttc putative PPT
ttcttgaattttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctctgctgtatagcttatcaaaattcttcacttgactagatgtcttaaaaagtatcaaagatggctgcttcttgaattttattttcagGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAGAAGCAAGTAGTCACTCCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG