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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatcttagaacctcatcatgaaatgcttgaccaatatataaatatgctgaatgctaatttcccagttatctttctcttttatttgcatcttgttcctacgtggttcagGTTGTGGGAGGGATTGATGAACATGTGCCCTCCCTTCCATCAAATTCTCAGGTTAAGCTTATTTCATTTGCAAAACTTCTTAGTCAG

Basic information

species Vitis vinifera
transcript Vv14s0128g00720.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864901|gb|DT013956.1|DT013956
EST:     CTATTGAGCTTCTTATCTGAGATTCCATCTATACGTCTTGTAGTG                         GTTGTGGGAGGGATTGATGAACATGTGCCCTCCCTTCCATCAAATTCTCAG
genomic: CTATTGAGCTTCTTATCTGAGATTCCATCTGTACGTCTTGTAGTGgtaagtaatc ... cgtggttcagGTTGTGGGAGGGATTGATGAACATGTGCCCTCCCTTCCATCAAATTCTCAG
EST: gi|71862763|gb|DT011818.1|DT011818
EST:     CTATTGAGCTTCTTATCTGAGATTCCATCTATACGTCTTGTAGTG                         GTTGTGGGAGGGATTGATGAACATGTGCCCTCCCTTCCATCAAATTCTCAG
genomic: CTATTGAGCTTCTTATCTGAGATTCCATCTGTACGTCTTGTAGTGgtaagtaatc ... cgtggttcagGTTGTGGGAGGGATTGATGAACATGTGCCCTCCCTTCCATCAAATTCTCAG
EST: gi|71862111|gb|DT011166.1|DT011166
EST:     CTATTGAGCTTCTTATCTGAGATTCCATCTATACGTCTTGTAGTG                         GTTGTGGGAGGGATTGATGAACATGTGCCCTCCCTTCCATCAAATTCTCAG
genomic: CTATTGAGCTTCTTATCTGAGATTCCATCTGTACGTCTTGTAGTGgtaagtaatc ... cgtggttcagGTTGTGGGAGGGATTGATGAACATGTGCCCTCCCTTCCATCAAATTCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaatttcccagttatctttctcttttatttgcatcttgttcctacgtggttcagGTTGTGGGAGGGATTGATGAACATGTGCCCTCCCTTCCATCAAATTCTCAGGTTAAGCTTATTTCATTTGCAAAACTTCTTAGTCAG
 tgctaat  putative branch site (score: 2)
                                       ttcctac  putative PPT
                 tttctcttttattt  TA-rich tract