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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaagactggattctgaaaattttattttaaacactatatttctttgtaaaacatgtcctctttgccttccatacagtacaactgaatggtactctttggttgacaagggactggtactgaaaactgtgaatatattccttgattgtagattgtttaaaattgataaatttgttatttcttgcagCTTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCA

Basic information

species Vitis vinifera
transcript Vv14s0128g00020.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0128g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S31_203V6.1 (Physcomitrella patens), 3'ss of exon 9
gtaccaaagactggattctgaaaattttattttaaacactatatttctttgtaaaacatgtcctctttgccttccatacagtacaactgaatggtactctttggttgacaagggactggtactgaaaactgtgaatatattccttgattgtagattgtttaaaattgataaatttgt-tatttcttgcagCTTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCA
        | |    |||       | | | |  |  |      || |||| |  | |    || || |  |    |  | | ||| |  ||  | |      ||||   |      |   ||||   || | | | |||||| ||   |   ||    | |  | |     | ||| |||| | |||||||||| |  |||||||| ||| | || || ||||| ||||||||||| ||||| || ||||| |||||||| || || |||||||| ||| |||| ||||
--------gtcccccttcctctctctctctctcgactatatgcattgtttggattaaagagtctattagtttctttttaatttcaattctat--ttcagcagcgttgttgaaatttagtcgctgatgtctattattttattccctgcacg---atgaactcatttcgtgttttctgtgtattgcatgcagCTTTTCTACCTGAGTGGAATTCTTACCGTCTTCTTTTGTGGCATTGTAATGTCACACTACACCTGGCATAACGTCACTGAAAGCTCACGAGTAACTACCA

upper sequence: Vv14s0128g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S207_23V6.2 (Physcomitrella patens), 3'ss of exon 9
gtaccaaagactggattctgaaaattttattttaaacactatatttctttgtaaaacatgtcctctttgccttccatacagtac-aactgaatggtactctttggttgacaagggactgg--tactgaaaactgtgaatatattccttgattgtagattgtttaaaattgataaatttgttatttcttgcagCTTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCA
        | ||   ||||      | | |  ||       ||| | || | |  | || |  | || |       | || | | || |   |  |    |        |      ||    |   |||   |||  ||   || || || | |  |    | ||   |  |   |   ||||| | |||||||||| |   ||||||||||| | || || ||||| ||||||||||| ||||| || || || |||||||||||||| |||||||| |||||||| ||||
--------gtctactttct---ctctctctactatgtcaattatgtattgggatcatatattgtattagttacttgttcaatcccaattctgttctgacttgcacgcagcttccagcttccttggcgaagtatgttgatccttttctggactatgaa---ctcaatgcttgtttttcgtttattgcatgcagCTTTTCTACTTGAGTGGGATTCTTACTGTCTTCTTTTGTGGCATTGTAATGTCCCACTATACCTGGCATAATGTTACTGAAAGCTCCCGAATAACCACCA

upper sequence: Vv14s0128g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S113_117V6.1 (Physcomitrella patens), 3'ss of exon 7
gtaccaaagactggattctgaaaattttattttaaacactatatttctttgtaaaacatgtcctctttgccttccatacagtacaactgaatggtactctttggttgacaagggactggtactgaaaactgtgaatatattccttgattgtagattgtttaaaattgataaatttgttatttcttgcagCTTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCA
                   |  | ||| |  ||  |   |  |||  |     ||  || |  || | |  ||    | | || | |     || | |        ||   || | || |||   ||  ||| ||| |        ||| |      ||| |  ||      |  || |||  | ||||||||| |   ||||||| ||  |  |||| ||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||  || ||||  |||||||
-------------------gtcagtttgaccttctatg-tggattgttcgtccaattatctgttcctggaatttttca-aatagatcgatgaggaaatgagcatacgatttgg-attgttac---aacttgtaaatctg-----aaattttcagaaattttactttcgcgtgtc-gtcattggt-gcagCTTTTCTACTTGAGTGGAATACTCTCAGTGTTCTTTTGTGGCATTGTAATGTCTCATTACACTTGGCATAATGTCACGGAAAATTCTCGAACCACAACCA

upper sequence: Vv14s0128g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ05720 (Selaginella moellendorffii), 3'ss of exon 7
gtaccaaagactggattctgaaaattttattttaaacactatatttctttgtaaaacatgtcctctttgccttccatacagtacaactgaatggtactctttggttgacaagggactggtactgaaaactgtgaatatattccttgattgtagattgtttaaaattgataaatttgttatttcttgcagCTTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCA
                                                                                                                             |   | |   | |||     | | | |  |  | |     | ||   | ||  ||| |    |||| || |  |||||||||||  | ||||| ||||| ||||||||||| ||||| ||||| |||||||| || || || || |||||  |||| |||||||
------------------------------------------------------------------------------------------------------------------------gtgatagtttttttctgtatagagaggtagcatttcttcttgttctcatgcgtatgccattcc----agCTGTTCTACCTGAGTGGGATCCTCACAGTCTTCTTTTGTGGCATTGTTATGTCACATTATACATGGCACAACGTCACGGAGAGCTCAAGAATCACAACCA

upper sequence: Vv14s0128g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ32893 (Selaginella moellendorffii), 3'ss of exon 7
gtaccaaagactggattctgaaaattttattttaaacactatatttctttgtaaaacatgtcctctttgccttccatacagtacaactgaatggtactctttggttgacaagggactggtactgaaaactgtgaatatattccttgattgtagattgtttaaaattgataaatttgttatttcttgcagCTTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCA
                                                                                                                             |   | |   | |||     | | | |  |  | |     | ||   | ||  ||| |    |||| || |  |||||||||||  | ||||| ||||| ||||||||||| ||||| ||||| |||||||| || || || || |||||  |||| |||||||
------------------------------------------------------------------------------------------------------------------------gtgagagtttttttctgtatagagaggtagcatttcttcttgttctcatgcgtatgccattcc----agCTGTTCTACCTGAGTGGGATCCTCACAGTCTTCTTTTGTGGCATTGTTATGTCACATTATACATGGCACAACGTCACGGAGAGCTCAAGAATCACAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatattccttgattgtagattgtttaaaattgataaatttgttatttcttgcagCTTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCA
                            aattgat  putative branch site (score: 4)
                                          ttatttctt  putative PPT
            attgtagattgtttaa  TA-rich tract