1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggaaagtaaatgtgctgactttcaagttaaataaaatgaaaccaatggaaattgacaaaagaagcatttgaaattactaattgtgcgtatttgtttacagATTGACAGGGTGAATCTTGAGATTCAGCAGGCTGAGCGGGAGTATGACCTTAATCGTGCTGCTGAACTCAAGTATGGGAGCCTGAACTCTTTGCAGCGTC
species | Vitis vinifera |
transcript | Vv14s0108g01500.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
tggaaattgacaaaagaagcatttgaaattactaattgtgcgtatttgtttacagATTGACAGGGTGAATCTTGAGATTCAGCAGGCTGAGCGGGAGTATGACCTTAATCGTGCTGCTGAACTCAAGTATGGGAGCCTGAACTCTTTGCAGCGTC
tactaat putative branch site (score: 1)
tttgttt putative PPT
atttgaaattactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaagtaaatgtgctgactttcaagttaaataaaatgaaaccaatggaaattgacaaaagaagcatttgaaattactaattgtgcgtatttgtttacagATTGACAGGGTGAATCTTGAGATTCAGCAGGCTGAGCGGGAGTATGACCTTAATCGTGCTGCTGAACTCAAGTATGGGAGCCTGAACTCTTTGCAGCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- -aagtaaa
- - - - - - tgctgac
- - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttg