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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatgcgttttacttcctaaggctgtgatcatatatcaatattcccaatatataccaactcttctaaattttgggagcagGTAGCAAGAAAAATGAAGGATGAAGATGGTTTCTTCTACCCACACAACCTTGACTTTCGAGGCCGTGCATATCCCATGCACCCTTACTTAAATCATCTTG

Basic information

species Vitis vinifera
transcript Vv14s0083g00790.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0083g00790.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G28100.1 (Glycine max), 3'ss of exon 9
gttagatgcgttttacttcctaaggctgtgatcatatatcaatattcccaatatataccaactcttctaaattttgggagcagGTAGCAAGAAAAATGAAGGATGAAGATGGTTTCTTCTACCCACACAACCTTGACTTTCGAGGCCGTGCATATCCCATGCACCCTTACTTAAATCATCTTG
|| || | | ||  || |  || |    | |   | ||   ||||||   || | |    || |  | || | | |||  ||||| ||| ||||||||||||||||||| ||||| | |||||||||||||||||| || ||||| ||||||||||||||||||||  |||||||||| ||||
gtaagcttccttgaacat--tatgtacattagtttgtaatcatattct--atgtctggtgacacacccaa-tgtggggtacagGTTGCACGAAAAATGAAGGATGAAGAGGGTTTTTACTACCCACACAACCTTGATTTCCGAGGGCGTGCATATCCCATGCACCCACACTTAAATCACCTTG

upper sequence: Vv14s0083g00790.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G51160.1 (Glycine max), 3'ss of exon 8
gttagatgcgttttacttcctaaggctgtgatcatatatcaatattcccaatatataccaactcttctaaattttgggagcagGTAGCAAGAAAAATGAAGGATGAAGATGGTTTCTTCTACCCACACAACCTTGACTTTCGAGGCCGTGCATATCCCATGCACCCTTACTTAAATCATCTTG
|| || | | ||  || |  |     |  | |  || ||| ||||||   || | |    || |  |  | | | |||  ||||||||  ||||||||||||||||||| ||||| | |||||||||||||||||| || ||||| ||||||||||||||||||||  |||||||||| ||||
gtaagcttccttgaacattatgtacattagtttgta-atccatattct--atgtctggtgacacgcccga-tgtggggtacagGTAGCGCGAAAAATGAAGGATGAAGAGGGTTTTTACTACCCACACAACCTTGATTTCCGAGGGCGTGCATATCCCATGCACCCACACTTAAATCACCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcatatatcaatattcccaatatataccaactcttctaaattttgggagcagGTAGCAAGAAAAATGAAGGATGAAGATGGTTTCTTCTACCCACACAACCTTGACTTTCGAGGCCGTGCATATCCCATGCACCCTTACTTAAATCATCTTG
                                    ttctaaa  putative branch site (score: 2)
     atatatcaatatt  TA-rich tract