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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgctatatttccctcataattaatattgtgaagtatctattgcattttattagtcttttttttttttttttgataggttgtattttattagtctttttagattatgcatactttttatttgactgttctatctgatgtatcccttttccacagATTTTACTAAATGAAGTAGCACCTAGACCTCACAATAGTGGTCATCACACTATTGAATCTTGCTACACTTCACAATTCGAACAACATCTTCGGGCGGTTG

Basic information

species Vitis vinifera
transcript Vv14s0081g00240.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0081g00240.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G133121_T01 (Zea mays), 3'ss of exon 8
gttgtgctatatttccctcataattaatattgtgaagtatctattgcattttattagtcttttttttttttttttgataggttgtattttattagtctttttagattatgcatactttttatttgactgttctatctgatgtatcccttttccacagATTTTACTAAATGAAGTAGCACCTAGACCTCACAATAGTGGTCATCACACTATTGAATCTTGCTACACTTCACAATTCGAACAACATCTTCGGGCGGTTG
                                                |||| || | |  | |   | |||||| | |  || |          || | || ||       |  | ||||  | | | | || | || |||      ||||   |||||||| | ||||| ||||| ||||| |||||||||||||| |||||||| || || || |||||||| |||||||  || || ||| | || ||  || 
-----------------------------------------------gtttttttggaccatctacatattttttcaaaatttat----------tcctcttgga------gtggtgtttacatcattatcct-tgtgttgt----tctttctctagATTTTATTGAATGAGGTAGCCCCTAGGCCTCACAATAGTGGGCATCACACAATAGAGTCATGCTACACCTCACAATATGAGCAGCATATACGCGCTATTC

upper sequence: Vv14s0081g00240.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G36930.1 (Glycine max), 3'ss of exon 8
gttgtgctatatttccctcataattaatattgtgaagtatctattgcattttattagtcttttttttttttttttga-taggttgtattttattagt---cttt------ttagattatgcatactttttatttgactgtt--ctatctgatg-----tatccct-----tttccacagATTTTACTAAATGAAGTAGCACCTAGACCTCACAATAGTGGTCATCACACTATTGAATCTTGCTACACTTCACAATTCGAACAACATCTTCGGGCGGTTG
||||||    | ||   || | || ||   ||  ||      | ||  |||  ||  | |||||| ||   |  ||| | |  |   |||||  |||    |||      ||  | |    || | || ||||||  |||       |||||       || |||     | | ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||  || |||||| | ||||| ||||
gttgtg----acttttttcttcatcaactctggaaatgcctcaatgtttttgttttttgttttttcttgactgctgaattgacttctttttacaagtaaattttctgccgttgcaatgcaaatgcattatatttgtttgtcaatcccctgatagtgaccatgcctgtgtttcttcacagATTTTATTAAATGAAGTGGCACCTAGACCTCACAATAGTGGTCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAACATTTGCGGGCTGTTG

upper sequence: Vv14s0081g00240.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G30620.1 (Glycine max), 3'ss of exon 7
gttgtgctatatttccctcataattaatattgtgaagtatctattgcattttattagtcttttttttttttttttgataggttgtattttattagtctttttagattatgcatactttttatttgactgttctatctgatgtatcccttttccacagATTTTACTAAATGAAGTAGCACCTAGACCTCACAATAGTGGTCATCACACTATTGAATCTTGCTACACTTCACAATTCGAACAACATCTTCGGGCGGTTG
                 |  | | |  | || |  |  | || | |   |   | | | ||||||||| ||   || |   |||  || | ||  |     || ||| ||  |  |  |    |||  ||         ||| |  |||   ||||||||||| |||||||||| || |||||||||||||||||||| |||||||| |||||||||||||| || |||||||  || |||||| | ||||| ||||
----------------gttctgactttt-ttcttcatcaactctggatatgcttcaatgtttttttttcttgactgctgtattgagttctttt--tacaagtaaatt-tgtttgttaatcccctgatagtgaccatgcctgtgtttctt---cacagATTTTATTAAATGAAGTGGCGCCTAGACCTCACAATAGTGGGCATCACACAATTGAATCTTGCTATACCTCACAATATGAGCAACATTTGCGGGCTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattatgcatactttttatttgactgttctatctgatgtatcccttttccacagATTTTACTAAATGAAGTAGCACCTAGACCTCACAATAGTGGTCATCACACTATTGAATCTTGCTACACTTCACAATTCGAACAACATCTTCGGGCGGTTG
                               atctgat  putative branch site (score: 4)
                                     tgtatcccttttcc  CT-rich tract
         atactttttatttga  TA-rich tract