Sequence
atgc intronic sequence ATGC exonic sequence...agttgtcctttcctgaaaatgtcaggattcaagtaggtaaactttattatgtactttgatttgcatttattatagttgaaacttctgttggaatcttcagGAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G142030_T01 (Zea mays), 3'ss of exon 8
agttgtcctttcctgaaaatgtcaggattcaagtaggtaaactttattatgtactttgatttgcatttattatagttgaaacttctgttggaatcttcagGAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTA
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--gtacatactactgaaagcgatcatattacaactgtagcactttgtaagac----cgagtagaagattgaccggttccttttactat-ataactttcagGAGATAATTAAGCACCTGAAGCATAGTTGCCCAGCCCATCTGTACGCTACTTCCATGTCACCACCAGCAGTCCAACAAGTTATCTCTGCTATTAAAGTTA
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 8
agttgtcctttcctgaaaatgtcaggattcaagtaggtaaactttattatgtactttga-----tttgcatttattatagttgaaacttctgttggaatcttcagGAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTA
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--gtgtttcatattggttcta-caggttcgaatcatggatattctgtatctcactattagaatattttgaattcttaca-ctgaaattt-tgtatctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCAGCTGCACAACAAATAATATCATCCATAAGAGTTA
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G26210.1 (Glycine max), 3'ss of exon 8
agttgtcctttcctgaaaatgtcaggatt-caagtagg-taaactttattat----gtactttgatttgcatttattatagttgaaacttctgttggaatcttcagGAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTA
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--ttcatattgattctacaggttcggatcacggatattctgcatctcattattagaatattttaaactg--tttcttatact--gaatttttgtatctactgtcagGACCTTATCCAACACTTGAAGTACACTTGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCGGCTGCACAACAAATAATTTCATCCATAAGAGTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|329112275|gb|JG391743.1|JG391743EST: AATC-TTTGGATCATGTGGTGGCTATATTGCAGGATCAAAG GAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACT
genomic: AATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgttttt ... gaatcttcagGAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatgtactttgatttgcatttattatagttgaaacttctgttggaatcttcagGAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTA
ctttgat putative branch site (score: 5)
tcttc putative PPT
atttattatagttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttgtcctttcctgaaaatgtcaggattcaagtaggtaaactttattatgtactttgatttgcatttattatagttgaaacttctgttggaatcttcagGAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACTTCAATGTCACCACCAGCTGTGCAACAAATTATCTCTGCTATAAAGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - cctttcc
- - - - - - - gaaaatg
- - - - - - - - - - - - - - - - - aggtaaa
- - - - - - - - - - - - - - - - - - - - - - - -tatgtac