Sequence
atgc intronic sequence ATGC exonic sequence...cttgaaactctataaattcttctattaatcaatgttttttggtcctattgtgatagtagaaataactcattaatgtctccgatgagaaatgactttgcagGCGGATTAGTAAGAAAGAAAAATTGAAACGAGGAATATATGTGAGGCATTTCAAAAACATTCCAATGGCTGATATGGAAATTGTTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g00980.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os11g32490.1 (Oryza sativa), 3'ss of exon 8
----------------cttgaaactctataaattcttctattaatcaatgttttttggtcctattgtgatagtagaaataactcattaatgtctccgatgagaaatgactttgcagGCGGATTAGTAAGAAAGAAAAATTGAAACGAGGAATATATGTGAGGCATTTCAAAAACATTCCAATGGCTGATATGGAAATTGTTCTT
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gtatcgctctgttatacatgtattcatctaaccatcctaagtaatgtaacatttttaaatcttctggcttggcacactgaatactttcttgtttcgattgtaaattaaa-----agGAAATCAAGCACAGAAGCCAAGCCGGATCGAGGAATATTTGTAAAGCATTTCAAGAACATTCCAATGGCTGATATGGAATTAGTTCTG
upper sequence: Vv14s0068g00980.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 3'ss of exon 8
-----cttgaaactct-ataaattcttctattaatcaatgttttt-----tggtccta-ttgtgatagta--gaaataactca-ttaatgtct-ccgatgagaaatgactttgcagGCGGATTAGTAAGAAAGAAAAATTGAAACGAGGAATATATGTGAGGCATTTCAAAAACATTCCAATGGCTGATATGGAAATTGTTCTT
|||| || | ||| || || |||| || | ||||| || | ||| || || || || | || ||||||| | | |||||| || ||| || || | |||||||||| ||| | ||||||||| || || ||||||||||| |||||||||||||||
gtaactttgaccctttgatattttgtttagccaatctccacattcatgaaggatcctaattttagaagtgctgatgtagtacaattggttccttccgatgattg-tatatgtgcagGAGGGCAGGTACTAAGACTAAGCCTGATCGAGGAATATTTGTAAAGCATTTCAAGAATATCCCAATGGCTGACATGGAAATTGTTCTT
upper sequence: Vv14s0068g00980.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G011136_T01 (Zea mays), 3'ss of exon 8
-----cttgaaactctataaattcttctattaatcaatgttttttggtcctattgtgatagtagaaataactcattaatgtc-tccgatgagaa-atgactttgcagGCGGATTAGTAAGAAAGAAAAATTGAAACGAGGAATATATGTGAGGCATTTCAAAAACATTCCAATGGCTGATATGGAAATTGTTCTT
| | ||| ||| || | ||| | ||| | | ||| || || | | || | || | || | || || | | |||| || | ||| || || | || ||||||| ||| | ||| ||||| || || ||||||||||| |||||||||||||||
gtagattcaatgttctg---attgctcaaccttcaaattcatgatggactc-tggtgttattattcttgatgcagttatattatctggcctgattgtgtatgtacagGAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTTCAAGAATATCCCAATGGCTGACATGGAAATTGTTCTT
upper sequence: Vv14s0068g00980.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G13940.1 (Arabidopsis thaliana), 3'ss of exon 15
cttgaaactctataaattcttctattaatcaatgttttttggtcctattgtgatagtagaaataactcattaatgtctccgatgagaaatgac-tttgcagGCGGATTAGTAAGAAAGAAAAATTGAAACGAGGAATATATGTGAGGCATTTCAAAAACATTCCAATGGCTGATATGGAAATTGTTCTT
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-------gtacgaaagcagagcagtagtgtgatatttagagg----gttgtga-gtttttgatctctcatcttgggtttggattctctctcacacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTTTAAGACCATTCCAATGGCTGATATGGAAATTGTGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattgtgatagtagaaataactcattaatgtctccgatgagaaatgactttgcagGCGGATTAGTAAGAAAGAAAAATTGAAACGAGGAATATATGTGAGGCATTTCAAAAACATTCCAATGGCTGATATGGAAATTGTTCTT
aaataactcattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttgaaactctataaattcttctattaatcaatgttttttggtcctattgtgatagtagaaataactcattaatgtctccgatgagaaatgactttgcagGCGGATTAGTAAGAAAGAAAAATTGAAACGAGGAATATATGTGAGGCATTTCAAAAACATTCCAATGGCTGATATGGAAATTGTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgagaaa