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gtaagcaaactacattggtttttatgaaatggtgcaggtaaaattgtgaaagctacttttattcctaatatgcagtttcttgtcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGGTTCACATACTCCATGCTTCTTTGCTTTCTTAGTACAGCTGGATTTTGG
species | Vitis vinifera |
transcript | Vv14s0068g00780.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGEST: gi|351046211|gb|FQ442589.1|FQ442589
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGEST: gi|351030030|gb|FQ430772.1|FQ430772
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGEST: gi|351043780|gb|FQ431332.1|FQ431332
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGEST: gi|351013510|gb|FQ425541.1|FQ425541
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCT CTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGEST: gi|352765309|gb|FQ466006.1|FQ466006
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTG
EST: ACAGTTTCAGGTGCCGTAGGACCATGCTCAGTGTTGTTCGCAAAATCTCT CTCCAACCTGCTGACATTGGCAATGTCTAGTGGCTA
genomic: ACAGTTTCAGGTGCCGTAGGATCATGCTCAGTGTTGTTCGCAAAATCTCTgtaagcaaac ... tcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTA
gtaaaattgtgaaagctacttttattcctaatatgcagtttcttgtcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGGTTCACATACTCCATGCTTCTTTGCTTTCTTAGTACAGCTGGATTTTGG
tcctaat putative branch site (score: 2)
tttcttgtcttgctc putative PPT
ttttattcctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaactacattggtttttatgaaatggtgcaggtaaaattgtgaaagctacttttattcctaatatgcagtttcttgtcttgctcagCTCCAACCTGCTGAGATTGGCAATGTCTAGTGGCTATCAGTTGCATAGCTGGTTCACATACTCCATGCTTCTTTGCTTTCTTAGTACAGCTGGATTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA