Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgctttttctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagtcttctatctttacacatcttcctgtctccagGTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTCCCATATGGCAGTCCATTGGCAGAACGACGAGTCAATCTCTCAAGTATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os02g32350.2 (Oryza sativa), 3'ss of exon 8
gtaagtgctttttctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagtcttctatctttacacatcttcctgtctccagGTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTCCCATATGGCAGTCCATTGGCAGAACGACGAGTCAATCTCTCAAGTATCA
||| || |||| | | || || | | | || || || | | | ||| | | ||||||| |||||||||||||| || |||||||||||||||||||| || | || || || ||||| | |||||||| || || ||||| ||||| || |
----gtgggttccctgt----tctcacaagtagtgtattcaacatgatcatgcgattgaagctaatttgctttgtgttgatcctttcat----agGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCTCCTTACGGAAGTCCTTCTGCAGAACGCCGGGTTAATCTTTCAAGCATTA
upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G136296_T03 (Zea mays), 3'ss of exon 9
gtaagtgctttttctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagt--cttctatctttacacatcttcctgtctccagGTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTCCCATATGGCAGTCCATTGGCAGAACGACGAGTCAATCTCTCAAGTATCA
|| || ||| | | || | ||||| |||| || ||| | ||||| || | | ||| || | || | ||||| || |||||||| ||||| || ||||| ||||| ||||||||| ||| |||||||||||||| | || ||||| || || ||||| ||||| || |
gtgtgt-cttacattctccgatgacagtgtgtattcatca-tgttcacataattgtatgatagtaactattttttttccatgttgatctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCTCCATATGGCAGTCCTTCAGCCGAACGTCGGGTTAATCTGTCAAGCATTA
upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 9
----------------------------------------------------------------------------------------------------gtaagtgctttttctgt-gaaattatttgacaaggtcatctctgttaactaaatacttaaatagtct--tctatctttacacatcttcctgtctccagGTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTCCCATATGGCAGTCCATTGGCAGAACGACGAGTCAATCTCTCAAGTATCA
|| | | | | | | | || || | || | ||| | || | ||| | | | | ||||| ||| | | || | ||||||| || |||||||| |||||||| ||||||||||||||||||||| | | ||||||||||||||| | ||||| || |||||||| || |||||||| |
gtaaaattttctctaaccattggtttatcccaaattaaaaaggatctcatggtgaataatatccctgaggatttggtttttgaccaaagccaatgacgttgtgtgatccacatatattgtagttgttgtattagtttatcccaaata-ttcaatcttcattcatttaagtctattttt-tggacttatctttttccagGTGGTTGAGGTTGTTAGTGGAGATTGCATCATTGTTGCTGATGATTCGATTCCATATGGCAGTCCACTAGCAGAGCGGCGAGTCAACCTTTCAAGTATTA
upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G33320.1 (Glycine max), 3'ss of exon 9
-----gtaagtgctttttctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagtcttc-tatctttacacatcttcctgtctccagGTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTCCCATATGGCAGTCCATTGGCAGAACGACGAGTCAATCTCTCAAGTATCA
| | || | | || || | || | ||| | | | ||| | | | | | | | ||| | | || | ||||||| || |||||||| |||||||| ||||||||||||||||||||| | || |||||||||||| | ||||| || |||||||| || |||||||| |
gtggtccacatatattgtagacgttgttgttgtattagtttatcccaaatg-ttcaatcttcattcattttaagtctttttttggacttatctttttccagGTGGTTGAGGTTGTTAGTGGAGATTGCATCATTGTTGCTGATGATTTGATTCCGTATGGCAGTCCACTAGCAGAGCGGCGAGTCAACCTTTCAAGTATTA
upper sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G38010.1 (Glycine max), 3'ss of exon 9
gtaagtgctttttctgtgaaattatttgacaaggtcatctctgttaactaaatacttaaatagtcttctatctttacacatcttcctgtctccagGTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTCCCATATGGCAGTCCATTGGCAGAACGACGAGTCAATCTCTCAAGTATCA
|||| | | | |||||||| | | || | | | | | | | ||| | | || | || | ||| | | ||||| || |||||||||||||||||||| || |||||||||||||| | | |||||||| ||||| | || || | ||||| || || |||||||| |
gtaaataatgctc------aattatttatttatgccaaat--agtcagtcttcattcatataagcatataacattttaa--cttgagttttacagGTGGTTGAGGTTGTGAGTGGAGACTGTATTGTTGTTGCTGATGATTCCATTCCATATGGTAGTCCTCTAGCTGAGAGGCGAGTTAACCTTTCAAGTATTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34547333|gb|CF515565.1|CF515565EST: CCCCAGCTACAAATTCAAAGGCAATCCATGACCAGAATTTTACAGGAAAA GTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTC
genomic: CCCCAGCTACAAATTCAAAGGCAATCCATGACCAGAATTTTACAGGAAAAgtaagtgctt ... ctgtctccagGTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgttaactaaatacttaaatagtcttctatctttacacatcttcctgtctccagGTTGTGGAGGTTGTGAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTCCCATATGGCAGTCCATTGGCAGAACGACGAGTCAATCTCTCAAGTATCA
aactaaa putative branch site (score: 2)
catcttcctgtctcc putative PPT
aactaaatacttaaat TA-rich tract