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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacattcccatcatcctttataatttgatctttttagtagagggttgcaagaaagtgccttatactttgactgaaattgtctttctaagataattctgcagCAAAAGTTAGACGCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACCTAATAGAGAAG

Basic information

species Vitis vinifera
transcript Vv14s0066g02370.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110378733|gb|EC943880.1|EC943880
EST:     TGCTGCAATGGCTTTATTGGGTGATGGACACAATTCAACAGCTATGAGAA                         CAAAAGTTAGACGCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACC
genomic: TGCTGCAATGGCTTTATTGGGTGATGGACACAATTCAACAGCTATGAGAAgtaattacat ... aattctgcagCAAAAGTTAGACGCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaagaaagtgccttatactttgactgaaattgtctttctaagataattctgcagCAAAAGTTAGACGCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACCTAATAGAGAAG
                  ctttgac  putative branch site (score: 4)
                                   tttctaagataatt  TA-rich tract