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...gctgtcttcattacctcgttatgttaatgtgcaagcatatagttttagagctagtggttggagacaaaatgatgaatctctgaatgcgtttgttatgcagGGACAGGTACGACCACAGTTATCATGATGGGCATGATTTTGATACTCGTTCAAGGTATGATAGGGGCTACCATGCAAGTAGTATCCGGGCTGGAGAAAGG
species | Vitis vinifera |
transcript | Vv14s0066g01020.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGTTGGAAAGAGGTGGGGGCCGGGGAGCTGACCAAGATCAACGTGACAG GGACAGGTACGACCACAGTTATCATGATGGGCATGATTTTGATACTCGTTCEST: gi|34550106|gb|CF518324.1|CF518324
genomic: AGGTTGGAAAGAGGTGGGGGCCGGGGAGCTGACCAAGATCAACGTGACAGgtacctatat ... tgttatgcagGGACAGGTACGACCACAGTTATCATGATGGGCATGATTTTGATACTCGTTC
EST: AGGTTGGAAAGAGGTGGGGGCCGGGGAGCTGACCAAGATCAACGTGACAG GGACAGGTACGACCACAGTTATCATGATGGGCATGATTTTGATACTCGTTC
genomic: AGGTTGGAAAGAGGTGGGGGCCGGGGAGCTGACCAAGATCAACGTGACAGgtacctatat ... tgttatgcagGGACAGGTACGACCACAGTTATCATGATGGGCATGATTTTGATACTCGTTC
tagagctagtggttggagacaaaatgatgaatctctgaatgcgtttgttatgcagGGACAGGTACGACCACAGTTATCATGATGGGCATGATTTTGATACTCGTTCAAGGTATGATAGGGGCTACCATGCAAGTAGTATCCGGGCTGGAGAAAGG
aaaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgtcttcattacctcgttatgttaatgtgcaagcatatagttttagagctagtggttggagacaaaatgatgaatctctgaatgcgtttgttatgcagGGACAGGTACGACCACAGTTATCATGATGGGCATGATTTTGATACTCGTTCAAGGTATGATAGGGGCTACCATGCAAGTAGTATCCGGGCTGGAGAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - cattacc
- - - - - - - - - - - - - - - gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgcg