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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggattcaaataaatctttattgattattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG

Basic information

species Vitis vinifera
transcript Vv14s0066g00310.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G162881_T01 (Zea mays), 3'ss of exon 3
gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggattcaaataaatctttattgattattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG
                                   | | |      |  | ||    | | |||| |  ||  ||||   | ||| |    | | |  | | ||||||| |||||||| || ||||| ||||| || ||  |  |||||||||| ||||| |||||||||||||||
----------------------------------gtaggagtgcaatcatttattagattattttctt-atcgaaatttctgtttttcacatgtaatctga-tatgcagGTTTGTTGAAATAATGGCAACTGTATTCTCAAGGGATGCATGGCGCTGTGTATGGCATATGATTCAG

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G08270.1 (Glycine max), 3'ss of exon 9
gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggat-tcaaataaatctttattgattattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG
  |  |    | ||  |  ||   | |      | |||  |  || ||    |||| |   | | |    | || || | | ||||     ||   | ||       ||| |||||||||||||||||| |||| |||||  || |||||||||||||||| ||||| ||||| |||
--acttaataacatgcacctttctttctttctgtcttgtgagcttcta----aagggatcatatcaaatgtatctaacatagctttgacacttgaaatttt----ctcagATTTGTTGAGATCATGGCTCCTGTATTTTCCAGAGATGCATGGCGTTGTGTGTGGCACATGATACAG

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G27470.1 (Arabidopsis thaliana), 3'ss of exon 10
----gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggattcaaataaatctttattg-attattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG
    |  | |  ||  || ||  | ||    |    | || | |||   |   || |  |||    || || | ||||      | || |||    || |||    | |  ||| ||||| ||||| |||||| |||| || || || || |||||||| ||||| |||||||||||||||
gtatgcttctttacttatctatatcaatagaaatgaacttagcaaaaaggatttgcatagaa--agttaatagtttcatcattttgttgattttgctactacaaccaaaatcagGTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAG

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S129_53V6.1 (Physcomitrella patens), 3'ss of exon 10
gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggattcaaataaatctttattgattattactta---aata-tgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG
|||      ||   |  |||||  ||  ||    | |   |  ||   |  |  |    ||   | |    ||   ||  | ||   |  ||| | |||    |||| ||||| |||||||||||||||||| |||||||||| ||||| |||||||||||  | ||| | || || |||
gtaataagtcaacctgtatttagttagtgattcgtgtcttaccttcctcctttggtcgttgaaatttactgtctgttagttgttgggtatttacttcttgtttaatactgcagATTTGTTGAGATCATGGCTCCTGTGTTTTCACGAAAAGCATGGCGTTGCATCTGGTACATAATACAG

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S448_20V6.3 (Physcomitrella patens), 3'ss of exon 10
gtatgtgcacagatttaatttaagtacagaacattttgaaa---atttgtactgtaaggaactgttttatggattcaaataaatct-----ttattgattattacttaaatat-gcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG
            |  ||        ||| | |||  ||  |    ||  ||   |      || ||||   |||||  |    | |     | | |||    |  ||  |||| |||| |||||||||||||||||  | |||||||| ||||| ||||||||||| || ||| | || || |||
----------gtaactagccaccaaacaaagcatcatgtgatgggttcataagatggcttccttttttg-agattcgtactcgtttgttggtcactgacggattgttcgatatcgcagGTTTGTTGAGATCATGGCACCCGTGTTTTCACGAAAAGCATGGCGTTGCGTCTGGTACATAATACAG

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ04271 (Selaginella moellendorffii), 3'ss of exon 5
gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggattcaaataaatctttattgattattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG---------------------------------
                            | |  |||||    |||    | ||   | ||   ||     ||| |   | | | ||| || |   | ||   ||  ||| ||||| |||||||||||| | || ||||| || || || ||||| ||||| ||||||||||||||                                  
----------------------------gtaagttttgt--gtttagtttctatttatcttccttgc---ttctagcta-tttctatcgactg--agtttgcta--cagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT

upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ32148 (Selaginella moellendorffii), 3'ss of exon 6
gtatgtgcacagatttaatttaagtacagaacattttgaaaatttgtactgtaaggaactgttttatggattcaaataaatctttattgattattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG---------------------------------
                            | |  |||||    |||    | ||   | ||   | || | ||| |   | | | ||| || |   | ||   ||  ||| ||||| |||||||||||| | || ||||| || || || ||||| ||||| ||||||||||||||                                  
----------------------------gtaagttttgt--gtttagtttctatttatct---tcattgcttctagcta-tttctatcgactg--agtttgcta--cagATTTGTGGAGATCATGGCTCCAGTTTTTTCGCGCAAGGCCTGGCGCTGTGTGTGGCATATGATTCAAAATGACTTGGTGCATGGCTGGGGACTAGACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaactgttttatggattcaaataaatctttattgattattacttaaatatgcagCTTTGTTGAGATCATGGCTACTGTGTTTTCTCGAAATGCATGGCGTTGTGTTTGGCATATGATTCAG
                              tattgat  putative branch site (score: 3)
               attcaaataaatcttt  TA-rich tract