1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgactctttcacattgtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGGCTCGATCCACAGATGATTTCAATGGGGCACAACTGAAAGCTGTTTGTG
species | Vitis vinifera |
transcript | Vv14s0060g02260.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|46918304|gb|CN547633.1|CN547633
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATTTTGCAG ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|110384620|gb|EC949072.1|EC949072
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|110387216|gb|EC951866.1|EC951866
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|110377043|gb|EC942103.1|EC942103
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|71880359|gb|DT029414.1|DT029414
genomic: AGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|34550777|gb|CF518995.1|CF518995
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGCTTCCACATCCCACTGAAGAAGCAAGAGCTTGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|110718444|gb|EE095285.1|EE095285
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|27585610|gb|CB008305.1|CB008305
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|71878498|gb|DT027553.1|DT027553
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|71878266|gb|DT027321.1|DT027321
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|33408222|gb|CF213849.1|CF213849
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAGGAGCTCGAATCTTGCAG ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|45771197|gb|CN007049.1|CN007049
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|30128623|gb|CB913962.1|CB913962
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|30252313|gb|CB969864.1|CB969864
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCC-ACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|30252322|gb|CB969873.1|CB969873
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCC-ACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|83275987|gb|DV939995.1|DV939995
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACCCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|110405468|gb|EC971009.1|EC971009
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|30300725|gb|CB977519.1|CB977519
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATTTTGCAG ATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|110722804|gb|EE099394.1|EE099394
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|110375176|gb|EC940137.1|EC940137
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|34543899|gb|CF512131.1|CF512131
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGEST: gi|71877789|gb|DT026844.1|DT026844
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
EST: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAG ATCCACTCAAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
genomic: AAATTGAGTTTCCACATCCCACTGAAGAAGCAAGAGCTCGAATCTTGCAGgtatgtcttc ... gtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTG
cacattgatcactctttgcagagctcttattgactctttcacattgtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGGCTCGATCCACAGATGATTTCAATGGGGCACAACTGAAAGCTGTTTGTG
tattgac putative branch site (score: 2)
attgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcttcaatgaatattttcttctagatcattacacattgatcactctttgcagagctcttattgactctttcacattgtatttgtagATCCACTCGAGAAAGATGACTGTTCATCCGGATGTCAATTTTGAAGAACTGGCTCGATCCACAGATGATTTCAATGGGGCACAACTGAAAGCTGTTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT