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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcaacatctattcattgattaatactggaacagatttgtgcaacttccctttactgaaagttttactttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g02220.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77581025|gb|DV219440.1|DV219440
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|30303522|gb|CB980316.1|CB980316
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|34320550|gb|CF373304.1|CF373304
EST:     AGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: AGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|110384527|gb|EC948970.1|EC948970
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|77585681|gb|DV221932.1|DV221932
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|30329044|gb|CD012306.1|CD012306
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|30133940|gb|CB919279.1|CB919279
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|110386543|gb|EC951144.1|EC951144
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|71868070|gb|DT017125.1|DT017125
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|110368925|gb|EC933063.1|EC933063
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|77579507|gb|DV218595.1|DV218595
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
EST: gi|27582331|gb|CB005026.1|CB005026
EST:     TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAG                         GCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
genomic: TTGCCAACATCATCCGACACCATGAGACAGAGTACCTGACATCTCTTCAGgtttgcaaca ... ctttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatactggaacagatttgtgcaacttccctttactgaaagttttactttggacagGCATCCTATTCAAATTTGCCAGACACCACTTTTAAG
 gattaat  putative branch site (score: 3)
                                        ttttacttt  putative PPT
                                    aaagtttta  TA-rich tract