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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgctcctcaatactatgctcttgtagttctttcatgtattgacttttgaccgagctaatgcgatgttcttggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAGGAATGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTT

Basic information

species Vitis vinifera
transcript Vv14s0060g02160.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G42180.2 (Glycine max), 3'ss of exon 8
gtaagtgctcctcaatactatgctcttgtagttctttcat--gtat-tgacttttgac--------cgagctaatgcgatgttcttggggtt--tagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAGGAATGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTT
|||||| ||  |  | |   ||    ||   |   ||| |  || | ||   ||  ||        |   | ||  | ||| |      |||   ||||||||||||| ||||| |||||| | ||||||||||||  ||| || || || |||||||||  ||| || ||  || |||| |||||  | ||  |  
gtaagtacttatttacatagtgtcaatgggttctcttcctcagtgtatgttcttcaacatgcatggctgaccaaaccaatgctggaactgttcccagATTCTTTGGCGTGGTCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGATGACTGGGACAAGGGTGCTGGTATCAAAATTGTAGATGGATTCTAGTTCC

upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G09130.3 (Arabidopsis thaliana), 3'ss of exon 8
----gtaagtgctcctcaatactatgctcttgtagttcttt-catgtattgacttttgaccgagctaatgc------gatgttcttggggtt-----tagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAGGAATGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTT
     ||  |  |||| |    |        ||| |  |     ||| || |   ||  || || ||| ||      |||| |||     |       |||||||||||||||||||||||||||| || || || ||  || |  | |||||||  ||||||||||| || ||| ||                      
tcttctaccttttcctgatgtttgcctgtgcgtaatgatgaatttgttttcatacttttccaagttaaagctttaaagatggtctcataatcattggcagATTCTTTGGCGCGGTCAAGAAAAGATTATTGCGGACGTGGTTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGC-------------------

upper sequence: Vv14s0060g02160.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G09130.2 (Arabidopsis thaliana), 3'ss of exon 8
----gtaagtgctcctcaatactatgctcttgtagttcttt-catgtattgacttttgaccgagctaatgc------gatgttcttggggtt-----tagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAGGAATGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTT
     ||  |  |||| |    |        ||| |  |     ||| || |   ||  || || ||| ||      |||| |||     |       |||||||||||||||||||||||||||| || || || ||  || |  | |||||||  ||||||||||| || ||| ||   || |   |  | ||   ||
tcttctaccttttcctgatgtttgcctgtgcgtaatgatgaatttgttttcatacttttccaagttaaagctttaaagatggtctcataatcattggcagATTCTTTGGCGCGGTCAAGAAAAGATTATTGCGGACGTGGTTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCGTAGTATGAGTCTAGTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544987|gb|CF513219.1|CF513219
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|110723416|gb|EE100702.1|EE100702
EST:     ATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTCTCACCTGAG
genomic: ATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|110375703|gb|EC940714.1|EC940714
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTCTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|110385484|gb|EC950016.1|EC950016
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTCTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|110383404|gb|EC947776.1|EC947776
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
EST: gi|34545979|gb|CF514211.1|CF514211
EST:     CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAG                         ATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG
genomic: CATATTATATGGATTCTACAAAAGCCAAAGAGTTTGGTGTCATTGACAAGgtaagtgctc ... tggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttctttcatgtattgacttttgaccgagctaatgcgatgttcttggggtttagATTCTTTGGCGCGGTCAAGAAAAGATAATGGCAGATGTTCTTTCACCTGAGGAATGGGACAAGAATGCCGGCATTCAAGTTGTTGATGGTATATAAGTTT
                                       tgttctt  CT-rich tract
         atgtatt  TA-rich tract