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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgatagttttattcactactgtttcttttgtgtttgtataaattcaggaggttcataatgcttttgttacgtagCGGCCCACGCTGTGGCCTTGGTGAACTTACACTTCCTGATAATGAACCAGGCAGCAGTATCATGCCT

Basic information

species Vitis vinifera
transcript Vv14s0060g01700.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01700.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagtgtgatagttttattcactactgtttcttttgtgtt---tgta-taaattcaggaggttcataatgcttttgttacgtagCGGCCCACGCTGTGGCCTTGGTGAACTTACACTTCCTGATAATGAACCAGGCAGCAGTATCATGCCT
||| |  |   |  | ||   | || | |||  ||| | |    || | ||  | |    |||| |  |||  ||| |    ||| |||||| | ||||| ||||||||||||  ||| ||||| ||||| ||||| |||||||||||||||
gtatggatctaatctatagggattatttttttctttctttaacatgcactatgtccttatggtttaccatgtctttat---atagTGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCT

upper sequence: Vv14s0060g01700.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G50950.2 (Arabidopsis thaliana), 3'ss of exon 10
----------------------------------------------------------------gtaagtgtgatagttttattcactactgtttcttttgtgtttgtataaattcaggaggttcataatgcttttgttacgtagCGGCCCACGCTGTGGCCTTGGTGAACTTACACTTCCTGATAATGAACCAGGCAGCAGTATCATGCCT
                                                                ||   | |      |||||  | |  |      | | |  || |   | || |  | ||   || |   |   |||  ||| || ||| | ||||| |||||||||||| | || ||||| ||||||||||| |||||||| ||||||
gtacgttatctaatattttttaatctttcttcaagatgtacatgttcttatgataatttaacatgtctttatatatactttatatagTGGTCCAAGATGTATTCTTATGATATTTTAACATGTCTTTA-TATATACTTTATATAGTGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcttttgtgtttgtataaattcaggaggttcataatgcttttgttacgtagCGGCCCACGCTGTGGCCTTGGTGAACTTACACTTCCTGATAATGAACCAGGCAGCAGTATCATGCCT
                                         cttttgtt  CT-rich tract
           tgtttgtataaatt  TA-rich tract