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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacttctgttttctctgtatcttagtgattaaagagctaatttccaaaagatagattacagtctagttgttttattcccttttttttggcattttctaactttaagaatactttgagcagTTGGTTCTGGTAATGGTGATATTACACTTTGGGAAGTTGCATTGCGAGAGAGGTTGGTTACAAAACAATTCAAGATATGGGACGTGACAGCTTGTTCATT

Basic information

species Vitis vinifera
transcript Vv14s0060g01680.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 8
gtatgaacttctgttttctctgtatcttagtgattaaagagctaatttccaaaagatagattacagtctagttgttttattcccttttttttggcattttc-taactttaagaatactttgagcagTTGGTTCTGGTAATGGTGATATTACACTTTGGGAAGTTGCATTGCGAGAGAGGTTGGTTACAAAACAATTCAAGATATGGGACGTGACAGCTTGTTCATT
                                          ||||||| | ||  |     |  || || |  | | | | |   | |  || |||   | |||||  |    | | ||||||||||||||||  ||||||||| ||||||||||||||  |||  |||||||| ||||||||  |||| | |||||||||||||||  |  |||| || |||||
-----------------------------------------gtaatttctataatttttga-attgtgtaat-atctgactactaatatcctgacataaacataactacatatttccattgagcagTTGGTTCTAATAATGGTGAAATTACACTTTGGGAGCTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCATGCTCATT

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 9
gtatgaacttctgttttctctgtatcttagtgattaaagagctaatttccaaaagatagattacagtctagttgttttattcccttttttttggcattttc-taactttaagaatactttgagcagTTGGTTCTGGTAATGGTGATATTACACTTTGGGAAGTTGCATTGCGAGAGAGGTTGGTTACAAAACAATTCAAGATATGGGACGTGACAGCTTGTTCATT
                                          ||||||| | ||  |     |  || || |  | | | | |   | |  || |||   | |||||  |    | | ||||||||||||||||  ||||||||| ||| ||||||||||| |||  || ||||| ||||||||  |||| | |||||||||||||||  |  |||| ||||||||
-----------------------------------------gtaatttctataatttttga-attgtgtaat-atctcactactaatatcctgacataagcataactacatatttccattgagcagTTGGTTCTAATAATGGTGAAATTTCACTTTGGGAACTTGGGTTTCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGCGTGTTCATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttttattcccttttttttggcattttctaactttaagaatactttgagcagTTGGTTCTGGTAATGGTGATATTACACTTTGGGAAGTTGCATTGCGAGAGAGGTTGGTTACAAAACAATTCAAGATATGGGACGTGACAGCTTGTTCATT
                            ttctaac  putative branch site (score: 1)
                         attttctaactttaa  TA-rich tract