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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcctttttcctcgatttctcttaggcaaatacatgattttaatggattggagtaataggaaattatgtcatggcattagctgtcaaactgaccttgttcttttctcaatatttttctccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG

Basic information

species Vitis vinifera
transcript Vv14s0060g00230.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00230.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G41240.1 (Glycine max), 3'ss of exon 8
gtaatcctt--tttcctcgatttctcttaggcaaatacatga-ttttaatggattggagtaataggaaat---tatgtcat-ggcattagctgtcaaactgaccttgttcttttctcaatatttttctccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG
|||||| ||   |||    ||  |    |   |   | || | ||| | | ||  | | |   || |||    ||  |||| |    | ||| | ||  ||| |||  ||  |      | || |   ||||||||||||||||| || || ||| ||||  ||| | | || |||||||||||  |||| ||||| || |||||||||||||||
gtaatcattgacttctcttataccaaaaacttaggaatatcagtttcatttgaaagaatttgcagaaaacggatacatcattgttgattgctcttaa-ttgaactt--tcaatgacttgttttctatcccttttcagTGCTTCTTTCCTCAAAACTTGATTGCCAGTGTTAAGACCCCGCTATTCATTCTTAATGCTGCTTATGATTCATGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32271244|gb|CD720403.1|CD720403
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATC
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATC
EST: gi|110415561|gb|EC981480.1|EC981480
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110363756|gb|EC927367.1|EC927367
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110373337|gb|EC937563.1|EC937563
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATC
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATC
EST: gi|18458238|gb|BM436516.1|BM436516
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110363559|gb|EC927156.1|EC927156
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110373299|gb|EC937521.1|EC937521
EST:     TTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|30327012|gb|CD010274.1|CD010274
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATA
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATA
EST: gi|110397107|gb|EC962828.1|EC962828
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110422538|gb|EC988864.1|EC988864
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|30321442|gb|CD004704.1|CD004704
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110696063|gb|EE074792.1|EE074792
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCATCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTCCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcattagctgtcaaactgaccttgttcttttctcaatatttttctccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTTCTCAATGCAGCCTATGATTCATGGCAG
              aactgac  putative branch site (score: 2)
                    ccttgttcttttctca  CT-rich tract
                            ttttctcaatattttt  TA-rich tract