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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcccagaaaactgcttattcttttctttgaatttcaactagaaaataaacataaaaagaatcttttctttatctatatgaattattattactcatatctttggcactgaagaagaaaaggggattggcttgatttgttttacagGAATATACAGAAACCTTTCAACAGTTGCCGAAAGCTACAATTGTAGACTTGTTCCAGAGAAGATATGCTCATTCACTTATT

Basic information

species Vitis vinifera
transcript Vv14s0030g00250.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698937|gb|EE077003.1|EE077003
EST:     GGCTAAGGGGACAGAGAGCTGATATTTCTCAAGAAGCAGCAGACATCAAA                         GAATATACAGAAACCTTTCAACAGTTGCCGAAAGCTACAATTGTAGACTTG
genomic: GGCTAAGGGGACAGAGAGCTAATATTTCTCAAGAAGCAGCAGACATCAAAgtaacttccc ... tgttttacagGAATATACAGAAACCTTTCAACAGTTGCCGAAAGCTACAATTGTAGACTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcatatctttggcactgaagaagaaaaggggattggcttgatttgttttacagGAATATACAGAAACCTTTCAACAGTTGCCGAAAGCTACAATTGTAGACTTGTTCCAGAGAAGATATGCTCATTCACTTATT
                                     gcttgat  putative branch site (score: 5)
 tttgtttt  CT-rich tract
 atttgtttta  TA-rich tract