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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttttgctaggttattcagtcacatatggtttgaatgtttctacatgggatttttatttttcatttctgcagtatattcaatccattttatctaggtcattagtttatcaatatagattctgagctaaacacatttctttgcagCAAGGAAAGATTTCTGAAGCTGAAAAATCAATAAAAACACTCAATGGAAAGGAAAGAGTCGCTGAGGTTATGAATGATCTCAGAGAAGGGCTTCAAGGTT

Basic information

species Vitis vinifera
transcript Vv14s0006g02720.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G07780.1 (Glycine max), 3'ss of exon 8
gtttcttttgctaggttattcagtcacatatggtttgaatgtttctacatgggatttttatttttcatttctgcagtatattcaatccattttatctaggtcattagtttatcaatatagattctgagctaaacacatttctttgcagCAAGGAAAGATTTCTGAAGCTGAAAAATCAATAAAAACACTCAATGGAAAGGAAAGAGTCGCTGAGGTTATGAATGATCTCAGAGAAGGGCTTCAAGGTT
                                       |  |  | ||| |    | |   |   || ||||  |     | ||| ||   | | ||  |  |  ||||    | | |  |||        |   |||  ||| |||||||| || || ||||||||||||||  | || ||||||||| ||||| | |||||||| ||||  |||||||||||  | | |  ||    ||||||||
--------------------------------------cttatcatgcatagatgatgtgcctcgtatatctgttgagatcttaatgcaaaattttta--ttgtaggttttctgagaaaatttc--------atgtattattttacagCAAGGCAAAATCTCTGAAGCTGAAAAGGCTATTAAAACACTCTATGGACAAGAAAGAGTTGCTGCAGTTATGAATGACTTAACAACAGCAAGTCAAGGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110403571|gb|EC969185.1|EC969185
EST:     TGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG                         CAAGGAAAGATTTCTGAAGCTGAAAAATCAATAAAAACACTCAATGGAAAG
genomic: TGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAGgtttcttttg ... ttctttgcagCAAGGAAAGATTTCTGAAGCTGAAAAATCAATAAAAACACTCAATGGAAAG
EST: gi|110370956|gb|EC934605.1|EC934605
EST:     TGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG                         CAAGGAAAGATTTCTGAAGCTGAAAAATCAATAAAAACACTCAATGGAAAG
genomic: TGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAGgtttcttttg ... ttctttgcagCAAGGAAAGATTTCTGAAGCTGAAAAATCAATAAAAACACTCAATGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaggtcattagtttatcaatatagattctgagctaaacacatttctttgcagCAAGGAAAGATTTCTGAAGCTGAAAAATCAATAAAAACACTCAATGGAAAGGAAAGAGTCGCTGAGGTTATGAATGATCTCAGAGAAGGGCTTCAAGGTT
                                 agctaaa  putative branch site (score: 3)
                                          catttcttt  putative PPT
         attagtttatcaatat  TA-rich tract