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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcttctcatgcctcctgcaaatatttcctctgtttattgcttcatcaactgattcacttcttcattttgttctcatttccatttggtgcctgaaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG

Basic information

species Vitis vinifera
transcript Vv14s0006g01790.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349821518|gb|FQ408077.1|FQ408077
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|71867004|gb|DT016059.1|DT016059
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|77585036|gb|DV221603.1|DV221603
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|352777638|gb|FQ466691.1|FQ466691
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|352778016|gb|FQ467069.1|FQ467069
EST:     CTACCGGGAAGAGTGGAATGCTGGATTTGTTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: CTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|349833335|gb|FQ416713.1|FQ416713
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|349820762|gb|FQ404136.1|FQ404136
EST:     TAAGTCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|349817382|gb|FQ405386.1|FQ405386
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAGACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|352777869|gb|FQ466922.1|FQ466922
EST:     ATGCGGGATTTGCTT                         ATGACGGAAACGGGGTGCCAATTGGTCCAAGG
genomic: ATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|349811362|gb|FQ407588.1|FQ407588
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGATCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|349826361|gb|FQ417858.1|FQ417858
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|351013683|gb|FQ433835.1|FQ433835
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|71867277|gb|DT016332.1|DT016332
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|351028613|gb|FQ446286.1|FQ446286
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|351017081|gb|FQ424508.1|FQ424508
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAGTGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|349807775|gb|FQ402166.1|FQ402166
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|349813416|gb|FQ413650.1|FQ413650
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|71866255|gb|DT015310.1|DT015310
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|351029000|gb|FQ435001.1|FQ435001
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|349815167|gb|FQ410390.1|FQ410390
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|351029862|gb|FQ427702.1|FQ427702
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
EST: gi|77578566|gb|DV218076.1|DV218076
EST:     TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTT                         ATGACCGAAACGGGGTGCCAATTGGTCCAAGG
genomic: TAAGCCTAAGGTTACAGGCTACCAGGAAGAGTGGAATGCTGGATTTGCTTgtaagatctt ... aaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgattcacttcttcattttgttctcatttccatttggtgcctgaaatttgcagATGACCGAAACGGGGTGCCAATTGGTCCAAGG
 aactgat  putative branch site (score: 3)
             ttcatttt  TA-rich tract