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...atctatgaactgatcagccttgttttattaagttattaatgtctttttttttttcattcttaatttgtggcataagatgtaaatttttactatgtcccagGTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGTCATCAGAAAGAAAAG
species | Vitis vinifera |
transcript | Vv14s0006g01660.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCTGGACCTTCAAAG GTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGTEST: gi|110715098|gb|EE092763.1|EE092763
genomic: AAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCTGGACCTTCAAAGgttttgttat ... tatgtcccagGTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGT
EST: AAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCTGGACCTTCAAAG GTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGTEST: gi|110414186|gb|EC980012.1|EC980012
genomic: AAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCTGGACCTTCAAAGgttttgttat ... tatgtcccagGTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGT
EST: TGCAACATTCTTCATGCTTCTGGACCTTCAAAG GTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGTEST: gi|18458843|gb|BM437121.1|BM437121
genomic: TGCAACATTCTTCATGCTTCTGGACCTTCAAAGgttttgttat ... tatgtcccagGTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGT
EST: AAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCTGGACCTTCAAAG GTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGT
genomic: AAGATGGTAGGGAAGCTTGCAACATTCTTCATGCTTCTGGACCTTCAAAGgttttgttat ... tatgtcccagGTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGT
tttttttttcattcttaatttgtggcataagatgtaaatttttactatgtcccagGTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGTCATCAGAAAGAAAAG
tcttaat putative branch site (score: 3)
tttttact putative PPT
ataagatgtaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctatgaactgatcagccttgttttattaagttattaatgtctttttttttttcattcttaatttgtggcataagatgtaaatttttactatgtcccagGTTGTCATAACAAGCATAAACATGGAAGGGAATCTTCTCCTCATTGGCAGTCATCAGAAAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -tatgaac
- - - - - - - cagcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgtaaa