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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgaaatgccaatttcagccttctttccgattgttgtgtatttctgttttgaacatttcctattttgagcaaattattttggcttttgttctgctatgatgatggtactatttctttcaattcttttgcagATTGTCTGTGAATTGCCAGCTGGTACCAACTGGAATTTTGATATACACTGGTACCCCAAGATACCTGGAGTCATATCAGCGTCTTCATTTGATGGCAAAA

Basic information

species Vitis vinifera
transcript Vv13s0158g00140.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G01290.1 (Glycine max), 3'ss of exon 8
gtaggtgaaatgcca-atttcagccttctttccgattgtt--gtgtatttctgttttgaacatttcctattttgagcaaattattttggcttttgttctgctatgatgatggtactatttc--tttcaattcttttgcagATTGTCTGTGAATTGCCAGCTGGTACCAACTGGAATTTTGATATACACTGGTACCCCAAGATACCTGGAGTCATATCAGCGTCTTCATTTGATGGCAAAA
|| ||||   ||||   ||| | || |||       ||||   ||  || | ||  ||     || |  |       | |||  |    |||| | || |  |||||| |  | |  |||    |     |    | ||||||| || ||||||||||||||| ||||| |||||||||||| | || ||||| |||| |||||||||||| |||||||| ||||| |||||||| ||||
gt-ggtgttttgccttgttttacccatctcatattctgtttgatgagttccagtactgcttgattgcattgacctttacatttatagtactttggctcagtgatgatggtttttcctttttgggtgggggtggggtacagATTGCCTATGAATTGCCAGCTGGGACCAATTGGAATTTTGATGTGCATTGGTATCCCAGGATACCTGGAGTAATATCAGCATCTTCCTTTGATGGAAAAA

upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G36050.2 (Glycine max), 3'ss of exon 8
gtaggtgaaatgccaatttc-agccttctttccgattgtt--gtgtatttctgttttgaacatttcctattttgagca-aattattttggcttttgttctgctatgatgatggtactatttc--tttcaattcttttgcagATTGTCTGTGAATTGCCAGCTGGTACCAACTGGAATTTTGATATACACTGGTACCCCAAGATACCTGGAGTCATATCAGCGTCTTCATTTGATGGCAAAA
|| |      ||||  |||  | || |||       ||||   ||  || | |   ||  |  || |  |       | || |||  |  | || | || |   ||||| |  | |  |||    |     |    | ||||||| ||  |||||||||||||| ||||| |||||||||||| | || ||||| |||| |||||||||||| |||||||| ||||| |||||||| ||||
gtggtgcttttgcctttttttacccatctcatattctgtttgatgagttccagaactgctcgattgcattgacatttacaaatatagta-cattggctcagtggtgatggtttttcctttttgggtgggggtggggtacagATTGCCTACGAATTGCCAGCTGGGACCAATTGGAATTTTGATGTGCATTGGTATCCCAGGATACCTGGAGTAATATCAGCATCTTCCTTTGATGGAAAAA

upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G63460.2 (Arabidopsis thaliana), 3'ss of exon 8
gtaggtgaaatgccaatttcagccttctttccgattgttgtgtatttctgttt-tgaacatttcctattt--tgagcaaattattttggcttttgttctgctatgatgatggtactatttctttcaattcttttgcagATTGTCTGTGAATTGCCAGCTGGTACCAACTGGAATTTTGATATACACTGGTACCCCAAGATACCTGGAGTCATATCAGCGTCTTCATTTGATGGCAAAA
                                    || ||||       |   | ||   | |  ||||  || |    | | || |     | || | | ||  |||  |     |||  | |||  |  |  ||||||||   ||| || || ||||| | ||| |||||||||||| | || |||||||| |||||||||||||| |||||||| |||||||||||||| ||||
------------------------------------gtagtgtgaaggaatcaataaaagatacagatttgctgggtccgtgaattagttaactatttt-ccattttgactgag---tttgatccaa--ccataacagATTGTGGCTGAGTTACCTGCTGGCAACAATTGGAATTTTGATGTTCATTGGTACCCAAAGATACCTGGAGTTATATCAGCATCTTCATTTGATGGGAAAA

upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G18830.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaggtgaaatgccaatttcagccttctttccgattgttgtgtatttctgttttgaacatttcctattttgagcaaattattttggcttttgttctgctatgatgatggtactatttctttcaattcttttgcagATTGTCTGTGAATTGCCAGCTGGTACCAACTGGAATTTTGATATACACTGGTACCCCAAGATACCTGGAGTCATATCAGCGTCTTCATTTGATGGCAAAA
    |||||  | ||||               |||| |  | ||    |||| | | | || | |||  |   ||  |||  | |   ||| |    |||   | |||| | | |||  | ||||| | |  ||||||||   ||| || ||  |||||   ||||||||||||||| | || ||||| || ||||| |||||||| |||||||| |||||| ||||||| ||||
----gtgaagagacaata--------------gatt-tgatatagccttgttgttagc-ttgcatatgcttgtcag-ttaactagtactttat----ctaaattaatggaatt-tttggtccaattatgt--cagATTGTGGCTGAGTTACCTACTGGTCAAAACTGGAATTTTGATGTTCATTGGTATCCAAAGATGCCTGGAGTTATATCAGCATCTTCAGTTGATGGGAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544619|gb|CF512851.1|CF512851
EST:     CCTGTGCCAAGGACAATCGAACCATTTGTTGGGACACAATTTCTGGAGAG                         ATTGTCTGTGAATTGCCAGCTGGTACCAACTGGAATTTTGATATACACTGG
genomic: CCTGTGCCAAGGACAATCGAACCATTTGTTGGGACACAATTTCTGGAGAGgtaggtgaaa ... tcttttgcagATTGTCTGTGAATTGCCAGCTGGTACCAACTGGAATTTTGATATACACTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggcttttgttctgctatgatgatggtactatttctttcaattcttttgcagATTGTCTGTGAATTGCCAGCTGGTACCAACTGGAATTTTGATATACACTGGTACCCCAAGATACCTGGAGTCATATCAGCGTCTTCATTTGATGGCAAAA
                                  tttctttcaattcttt  CT-rich tract
                                tatttctttcaatt  TA-rich tract