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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatctcctataagttctcatcttacacatgcctattggacttcaaaatttttctttcatccatcatgttcctgtttggttttcttctcataacagCATGGAGAAAAGATTGAAGGCACAGTCTGGGAACTCCAGCAAGGAAAATCTGATTCCCCTGCTCCAGACTCTAAGCCTTGGCAGGCTTTCCCTGATGAGC

Basic information

species Vitis vinifera
transcript Vv13s0156g00640.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33403452|gb|CF209079.1|CF209079
EST:     CTTCGAAAAACCAAACCTCAACTGGACTTCAGTCTGCTGCCACTCCTCCG                         CATGGAGAAAAGATTGAAGGCACAGTCTGGGAACTCCAGCAAGGAAAATCT
genomic: CTTCGAAAAACCAAACCTCAACTGGACTTCAGTCTGCTGCCACTCCTCCGgtatcatctc ... ctcataacagCATGGAGAAAAGATTGAAGGCACAGTCTGGGAACTCCAGCAAGGAAAATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaaatttttctttcatccatcatgttcctgtttggttttcttctcataacagCATGGAGAAAAGATTGAAGGCACAGTCTGGGAACTCCAGCAAGGAAAATCTGATTCCCCTGCTCCAGACTCTAAGCCTTGGCAGGCTTTCCCTGATGAGC
                           ttcctgtttggttttc  CT-rich tract
     aatttttctttcat  TA-rich tract