1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataagataagagagcaatttctgtattgcttgtctgtattttccttgcattagccttcttattaggtaaaaagctagactaatttttagaatgtcaacagGTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGATAGAAAGGTCGCTGCAAATTTGCTTCAGAGGCTGCTTTACTACTTTCCTC
species | Vitis vinifera |
transcript | Vv13s0106g00790.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG GTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGATEST: gi|110698656|gb|EE076402.1|EE076402
genomic: GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAGgttcatcctc ... atgtcaacagGTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGAT
EST: GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG GTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGATEST: gi|110698365|gb|EE075791.1|EE075791
genomic: GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAGgttcatcctc ... atgtcaacagGTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGAT
EST: GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAG GTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGAT
genomic: GATAATCAGCTGTGTTGAAAAATGGAATCGCTCTGAAGGAACGCCTCAGgttcatcctc ... atgtcaacagGTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGAT
tgcattagccttcttattaggtaaaaagctagactaatttttagaatgtcaacagGTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGATAGAAAGGTCGCTGCAAATTTGCTTCAGAGGCTGCTTTACTACTTTCCTC
gactaat putative branch site (score: 2)
actaatttttagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataagataagagagcaatttctgtattgcttgtctgtattttccttgcattagccttcttattaggtaaaaagctagactaatttttagaatgtcaacagGTGGCTTATACTTTTGATGCGGGGCCGAATGCAGTTCTGATTGCACGTGATAGAAAGGTCGCTGCAAATTTGCTTCAGAGGCTGCTTTACTACTTTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- aagataa
- - - - - - - - - - - - - -gcttgtc
- - - - - - - - - - - - - - - - - - - - - ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaa