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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtataagacaagtaatcaacaccaaatttttcattccaaaaaacacctaatcatgtccctggtagGTACCCTATGCTGGAGTCCATTCAAAAGTACCTCTGGCCAAGACTCTGCAAACTGGATCAGCGAACATT

Basic information

species Vitis vinifera
transcript Vv13s0074g00450.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023598|gb|FQ432981.1|FQ432981
EST:     GTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACT                         GTACCCTATGCTGGAGTCCATTCAAAAGTACCTCTGGCCAAGACTCTGCAA
genomic: GTCCCTCTCCAACCACTACCAGAGTCACTTCAGTTGCATCTCCTGGAACTgtaagtagta ... tccctggtagGTACCCTATGCTGGAGTCCATTCAAAAGTACCTCTGGCCAAGACTCTGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaatcaacaccaaatttttcattccaaaaaacacctaatcatgtccctggtagGTACCCTATGCTGGAGTCCATTCAAAAGTACCTCTGGCCAAGACTCTGCAAACTGGATCAGCGAACATT
                                  acctaat  putative branch site (score: 3)
                                           tgtccct  putative PPT
             aaatttttcatt  TA-rich tract