1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaatgaacactactaatattgatcacctccttgatcaatttatttcatcatcatctccattctattcctagctttctaatctaattttcttaaatgcagAATGCAGCAGAGAAGCCCCCATTCTTCCTCCCAAGCTGGTCAGGAATGTATATGGTAAATGCATTTGTAGTCATCTGGGTCTTCATAGTTGGCTTCGGCT
species | Vitis vinifera |
transcript | Vv13s0067g00330.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCCAGCTCTTGCCCATATGCTCACTTACAGAAAGGCCTCAGCCAGAAAG AATGCAGCAGAGAAGCCCCCATTCTTCCTCCCAAGCTGGTCAGGAATGTATEST: gi|77585741|gb|DV221963.1|DV221963
genomic: TCCCAGCTCTTGCCCATATGCTCACTTACAGAAAGGCCTCAGCCAGAAAGgtaaatggcc ... ttaaatgcagAATGCAGCAGAGAAGCCCCCATTCTTCCTCCCAAGCTGGTCAGGAATGTAT
EST: TCCCAGCTCTTGCCCATATGCTCACTTACAGAAAGGCCTCAGCCAGAAAG AATGCAGCAGAGAAGCCCCCATTCTTCCTCCCAAGCTGGTCAGGAATGTAT
genomic: TCCCAGCTCTTGCCCATATGCTCACTTACAGAAAGGCCTCAGCCAGAAAGgtaaatggcc ... ttaaatgcagAATGCAGCAGAGAAGCCCCCATTCTTCCTCCCAAGCTGGTCAGGAATGTAT
tcatcatcatctccattctattcctagctttctaatctaattttcttaaatgcagAATGCAGCAGAGAAGCCCCCATTCTTCCTCCCAAGCTGGTCAGGAATGTATATGGTAAATGCATTTGTAGTCATCTGGGTCTTCATAGTTGGCTTCGGCT
ttttctt CT-rich tract
tttctaatctaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgaacactactaatattgatcacctccttgatcaatttatttcatcatcatctccattctattcctagctttctaatctaattttcttaaatgcagAATGCAGCAGAGAAGCCCCCATTCTTCCTCCCAAGCTGGTCAGGAATGTATATGGTAAATGCATTTGTAGTCATCTGGGTCTTCATAGTTGGCTTCGGCT
- aatgaac
- - - - - - - - - - - - - cctcctt
- - - - - - - - - - - - - - - - - - - - - - - catcatc