Sequence
atgc intronic sequence ATGC exonic sequencegtttctgtcctcccatattttttcatgatttctttttgtgcttcagagttacatcattaacatttcattttttattcatcatgatagGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0064g01360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G118316_T01 (Zea mays), 3'ss of exon 8
gtttctgtcctcccatattttttcatgatttctttttgtgcttcagagttacatcattaacatttcattttttattcatc--atgatagGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
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------gttagttgattttcactacagctgtttgcttttaatcgagcatattaattcaatgcctactttctttattccctgaactgtagGTTTCTGTTGAACTATCATTCATGGAAGCTGTCCAAGGTTGCAGAAAAACCATTACGTACGAAGCTGATACTTTTTGTGGAACTTGCA
upper sequence: Vv13s0064g01360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G42640.1 (Glycine max), 3'ss of exon 8
gtttctgtcctcccatattttttcatgatttctttttgtgcttcagagttacatcattaacatttcattttttattcatcatgatagGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
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-gttctttctttcttcatatcttctggtcatctttaagtatgcaaggacttgtttgaggaaatg-catcttctgtttttcac---agACTTTTATTGAACTATCTTTTATGGAAGCTGTCCGGGGATGCAATAAAACTATTACATTTCAAACAGAAGTGCTTTGTAACACCTGTG
upper sequence: Vv13s0064g01360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G16150.1 (Glycine max), 3'ss of exon 8
gtttctgtcctcccatattttttcatgatttctttttgtgcttcagagttacatcattaacatttcattttttattcatcatgatagGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
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gttcttgtttttcttcatatcttctggacatctttaagtatgcgaggacttgtttgaggaaatgcatcttgttctgttttttcacagACTTTCATTGAACTATCTTTTATGGAAGCTGTCCGGGGATGCAACAAAACTATTACATTTGAAACAGAAGTGCTTTGTAACACCTGTG
upper sequence: Vv13s0064g01360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G00580.1 (Glycine max), 3'ss of exon 8
gtttctgtcctcccatattttttcatgatttctttttgtgcttcagagttacatcattaacatttcattttttattcatcatgatagGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
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gtttttttctttcttcatatttggactcttt-taagtatgctaaggtgttgtttgaccaaaagcatctcaataatttctttc---agACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTG
upper sequence: Vv13s0064g01360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G36820.1 (Glycine max), 3'ss of exon 8
gtttctgtcctcccatattttttcatgatttctttttgtgcttcagagttacatcattaacatttcattttttattcatcatgatagGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
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gttttt-tctttcttcatatttggactcttt-taagtaagctaaggagttgtttgaccaaaggcatctcaataatttctttc---agACTTTTATTGAACTATCTTTTATGGAAGCAGTACAAGGGTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTG
upper sequence: Vv13s0064g01360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G48030.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttctgtcctcccatattttttcatgatttctttttgtgcttcagagtta-catcattaacatttcattttttattcatcatgata-gGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
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gtattgcgatctgcttattttcctagagatcattttggtgctttaagattaataggtttctcttttctttccttctttactgttgtaagGTTTTGCTTGATCTTTCTTTCATGGAAGCTGTTCAAGGATGCTCCAAAACTGTGACTTTTCAAACCGAGATGGCTTGTAATACTTGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgtgcttcagagttacatcattaacatttcattttttattcatcatgatagGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
cattaac putative branch site (score: 2)
ttacatcattaacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttctgtcctcccatattttttcatgatttctttttgtgcttcagagttacatcattaacatttcattttttattcatcatgatagGTTTCCATTGAACTATCTTTCATGGAAGCTGTCCAGGGATGCACTAAAACTGTAACATTTCAAACTGCTTTGCCTTGTGAAGCTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC