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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggggtaattagtttcttctcttttgatcaactcccctaatatgatatatgtttttgcaaccttggctttatgtcagagactcagatttttcctaattgtatagccatgcactgatatgcagtctgcataatgtcactgactttggtgatttggtctagGTGTACTACTGCTAGGGAGGGTAATAGCAGCGACATTCTGTGTGACCTTGGCGGCATCATTGGCTGCACGGCTGGGCTCAACTCCTATGGCTGCGTTCCA

Basic information

species Vitis vinifera
transcript Vv13s0064g00940.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G36620.1 (Glycine max), 3'ss of exon 10
gtaaggggtaattagtttcttctcttttgatcaactcccctaatatgatatatgtttttgcaaccttggctttatgtcagagactcagatttttcctaattgtat--agccatgcactgat-atgcagtctgcataatgtcactgactttggtgatttggtctagGTGTACTACTGCTAGGGAGGGTAATAGCAGCGACATTCTGTGTGACCTTGGCGGCATCATTGGCTGCACGGCTGGGCTCAACTCCTATGGCTGCGTTCCA
                                                       ||||  || |||    ||||     | |||    | ||     |||  ||  | |  |||| |  | |||  |      |  | ||| | | ||||   | ||  |  ||| | | |  || |    || |||||||||| |||||| |||||||||||||| |||||||||||  || |||| || |||| ||||||||| || || ||
-------------------------------------------------------ttttttaatctt----ttatt----aaacttttttcttcgtatattacattaaactttgcattacttatgttgga-atttgttttcaatta-tttgacaaattattgcagGAGGATTTTTGATGCTAAGAGTAATAGCAGTGACATTTTGTGTGACCTTGGCAGCATCATTGGCATCAAGGCTAGGTTCAATTCCTATGGCAGCATTTCA

upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G36610.1 (Glycine max), 3'ss of exon 7
gtaaggggtaattagtttcttctcttttgatcaactcccctaatatgatatatgtttttgcaaccttggctttatgtcagagactcagatttttcctaattgtatagccatgcactgatatgcagtctgcataatgtcactgactttggtgatttggtctagGTGTACTACTGCTAGGGAGGGTAATAGCAGCGACATTCTGTGTGACCTTGGCGGCATCATTGGCTGCACGGCTGGGCTCAACTCCTATGGCTGCGTTCCA
                                                  | | |||    ||   |   | ||    |   | | ||| |  |  |  |||| |  |  |    | |||       |   |||| ||||    ||              |||||  ||| || |    |||||| |  ||| |||||| ||| ||||||| || ||||||||||| ||| |||| || |||| |||||||||||| || ||
--------------------------------------------------tctatttcaaaaaaaatccttatagaatattaa-taagaataatgttggttgtgttact-tattataataactttcatatttaatttcaccattttcaac----------agGTGGTCTATTGTTGACAAGGGTAGTGTCAGTGACATTTTGTATGACCTTAGCAGCATCATTGGCAGCAAGGCTAGGTTCAATTCCTATGGCTGCATTTCA

upper sequence: Vv13s0064g00940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G27300.1 (Glycine max), 3'ss of exon 8
gtaaggggtaattagtttcttctcttttgatcaactcccctaatatgatatatgtttttgcaaccttggctttatgtcagagactcagatttttcctaattgtatagccatgcactgatatgcagtctgcataatgtcactgact--ttggtgatttggtctagGTGTACTACTGCTAGGGAGGGTAATAGCAGCGACATTCTGTGTGACCTTGGCGGCATCATTGGCTGCACGGCTGGGCTCAACTCCTATGGCTGCGTTCCA
                                                       |||  ||   |    | ||  | || || ||| | ||     ||| ||| | |  ||||    ||   |   |  ||  |||     | |  ||| | | ||  |  ||| | | |  || |    | |||||||||||  ||||| ||||| ||||| ||  |||||||||||||| |||| || |||| ||| |||||||| || ||
-------------------------------------------------------tttcacatatta---tatacattagtgaatcatagtt-----aatggta-aactttgcaagattacttatgttcgattttgttttcaattatttgatcaattattgcagGAGGATTGTTGATGCTAAAGGTAATAGCAGTCACATTTTGTGTTACCTTAGCAACATCATTGGCTGCAAGGCTAGGTTCAATTCCCATGGCTGCATTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgcactgatatgcagtctgcataatgtcactgactttggtgatttggtctagGTGTACTACTGCTAGGGAGGGTAATAGCAGCGACATTCTGTGTGACCTTGGCGGCATCATTGGCTGCACGGCTGGGCTCAACTCCTATGGCTGCGTTCCA
                              cactgac  putative branch site (score: 2)
                       ataatgt  TA-rich tract