Sequence
atgc intronic sequence ATGC exonic sequence...tgaagggttggttgatgttatgttccggggaataaaatcatttccacaccccccatccctctttttttctgttaattcttgctctttcctgacaatgaagGGCTTTGCAAACTGCGCTGTTTCCCACCTGTAGCACTTGCTTGGGATACTACATCAGGTCTTCATGTGGTTCCAAATTTGTATGGGGAGACTATTGTGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0047g01140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G24220.2 (Glycine max), 3'ss of exon 13
------------------tgaagggttggttgatgttatgttccggggaataaaatcatttccacaccccccatccctctttttttctgttaattcttgctctttcctgacaatgaagGGCTTTGCAAACTGCGCTGTTTCCCACCTGTAGCACTTGCTTGGGATACTACATCAGGTCTTCATGTGGTTCCAAATTTGTATGGGGAGACTATTGTGGT
| |||| || ||||| | || ||| || |||| || | | |||| ||| | || | | | | | ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |||||||||| | | |
actcatgtttcatttctgcatatagttgaatg-cattatgaatttgtgattaatat--tttctgcagtgtttgatgttttcttttcagcttagata--actatagCTGGGTATTTCAGGGCTTTGCAAATTGCGCTGTTTCCCACCTGTTGCACTTGCTTGGGATGATACATCTGGTCTTCATGTATATCCAAATTTGAACAGTG-------------
upper sequence: Vv13s0047g01140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G06860.1 (Glycine max), 3'ss of exon 12
----tgaagggttggttgatgttatgttccggggaataaaatcatttccacaccccccatccctctttttttctgttaattcttgctctttcctgacaatgaagGGCTTTGCAAACTGCGCTGTTTCCCACCTGTAGCACTTGCTTGGGATACTACATCAGGTCTTCATGTGGTTCCAAATTTGTATGGGGAGACTATTGTGGT
| |||| || |||| | | || || |||| | | || || ||||| | | | | || || | | | ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |||||||||| | | ||||| ||||| ||
tctgcatatagttgaatg-cattataaatttgtggtgaatatt-tttctgctgtgtttaatgct-ttcttttcagctgaga-taactattgctcggtgtttcagGGCTTTGCAAATTGCGCTGTTTCCCACCTGTTGCACTTGCTTGGGATGATACATCTGGTCTTCATGTATATCCAAATTTGAACAGTGAGACAATTGTTGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaccccccatccctctttttttctgttaattcttgctctttcctgacaatgaagGGCTTTGCAAACTGCGCTGTTTCCCACCTGTAGCACTTGCTTGGGATACTACATCAGGTCTTCATGTGGTTCCAAATTTGTATGGGGAGACTATTGTGGT
tcctgac putative branch site (score: 2)
tccctctttttttctg CT-rich tract
tttttttctgttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaagggttggttgatgttatgttccggggaataaaatcatttccacaccccccatccctctttttttctgttaattcttgctctttcctgacaatgaagGGCTTTGCAAACTGCGCTGTTTCCCACCTGTAGCACTTGCTTGGGATACTACATCAGGTCTTCATGTGGTTCCAAATTTGTATGGGGAGACTATTGTGGT
- - gggttgg
- - - - - - - - - - - - - - - aataaaa