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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaaatgattcccatttgctggcatcatgttacatgagaactaaattgagataaactctacgctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG

Basic information

species Vitis vinifera
transcript Vv13s0019g05360.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05360.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G34220.2 (Glycine max), 3'ss of exon 6
-------gtaaacaaatg-attccc--atttgctggcatcatgttacatga-gaactaaattgagataaactctacgctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG
       ||    ||  | |||||    | |  ||  || |  | | |  |  |||||| |||| || |  |||  || ||||||||| |||||||| || ||||||||||| ||||| ||||||| | | || || ||||| |||||
gtttgctgtgcctaacggtattccttggtatattgtgattac-tcatacaataaactaagttga-atgacttct--gccttttcagGCTAGTGGGGCAAGGATAAAGATATCAGATAGAGGTGATTACGTATCTGGAACAACCGATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71866666|gb|DT015721.1|DT015721
EST:     TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG                         GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: gi|349827032|gb|FQ421305.1|FQ421305
EST:     TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAATCAG                         GCCAGTGGGGCTAGAATAAAGATATCTG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTG
EST: gi|77581507|gb|DV219700.1|DV219700
EST:     TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG                         GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: gi|71865533|gb|DT014588.1|DT014588
EST:     TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG                         GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: gi|161713236|gb|FC063668.1|FC063668
EST:     TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG                         GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: gi|87586077|gb|DY474538.1|DY474538
EST:     TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG                         GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: gi|351046045|gb|FQ441428.1|FQ441428
EST:     TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAA                         GCCAGTGGGGCTAGA-TAAA
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAA
EST: gi|110391242|gb|EC956204.1|EC956204
EST:     TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG                         GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
EST: gi|351029639|gb|FQ427479.1|FQ427479
EST:     TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAG                         GCCAGTGGGGCTAGAATAA
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAA
EST: gi|110376153|gb|EC941197.1|EC941197
EST:     TTGGGCTTGTCGTTGGTCGTGGTGGAAGGAATATAATGGACATCAGTCAG                         GCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG
genomic: TTGGGCTTGTCGTTGGTCGTGGCGGAAGGAATATAATGGACATCAGTCAGgtaaacaaat ... gctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctggcatcatgttacatgagaactaaattgagataaactctacgctttttcagGCCAGTGGGGCTAGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG
                      aactaaa  putative branch site (score: 2)
                                       ctctacgctttttc  putative PPT
                         taaattgagataaa  TA-rich tract