Sequence
atgc intronic sequence ATGC exonic sequencegtatgtatttcaagatttctaattgttgattcacattgtattaagatatttctgaagcataagtgtgttcgaatttcagGAGCTTCCTTTTGTGCGCTACCGTGCCGCCAAGTTCCTTGATCCAACCACAGCAACAACATTTCGTGATCTAATTCCTACAAAGCTTGCTGCTGCAGTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G03230.1 (Glycine max), 3'ss of exon 8
-----------------------------------gtatgtatttcaagatttctaattgttgattcacattgtattaagatatttctgaagcataagtgtgttcgaatttcagGAGCTTCCTTTTGTGCGCTACCGTGCCGCCAAGTTCCTTGATCCAACCACAGCAACAACATTTCGTGATCTAATTCCTACAAAGCTTGCTGCTGCAGTAT
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gtatgtggatactgctctgtgacaaggatactataaattgtagtcaatgttttataattgttcaaacatgtgat-tgagaagtcttctgaagcatgtaaatgtttt--tttaagGAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACAATGACTACTTTCCGTGATCTTATTCCTACAAAGCTTGCTGCTGGAGTCT
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G14450.1 (Glycine max), 3'ss of exon 8
----------------------------------------------gtatgtatttcaagatttctaattgttgattcacattgtattaagatatttctgaagcataagtgtgttcgaatttcagGAGCTTCCTTTTGTGCGCTACCGTGCCGCCAAGTTCCTTGATCCAACCACAGCAACAACATTTCGTGATCTAATTCCTACAAAGCTTGCTGCTGCAGTAT
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gtatgtagtcaatgctttgctcttttatcatagaaattaaaaaaaaaattgtaatcaatgttctataattgttcaaacaaatgatcgataaat-cttctatatcgtgtaaatgttt---ctctagGAATTTCCTTTTGTCCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACAATGACTACCTTCCATGATCTTATTCCTACAAAACTTGCTGCTGGTGTCT
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G03970.1 (Glycine max), 3'ss of exon 9
---------------------------gtat-gtatttcaagatttctaattgttgattcaca-ttgtattaagatatttctgaagcataagtgtgttcgaatttcagGAGCTTCCTTTTGTGCGCTACCGTGCCGCCAAGTTCCTTGATCCAACCACAGCAACAACATTTCGTGATCTAATTCCTACAAAGCTTGCTGCTGCAGTAT
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gtatgtagtcaatgccttgctcttttatcatagaaattaaaaaattgtaatcaatgttctataattgttctaaaattgtaatcaatgttctgtaaatgtttctct-agGAATTTCCTTTTGTCCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACAATGACTACCTTCCATGATCTTATTCCTACAAAACTTGCTGCTGGTGTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgattcacattgtattaagatatttctgaagcataagtgtgttcgaatttcagGAGCTTCCTTTTGTGCGCTACCGTGCCGCCAAGTTCCTTGATCCAACCACAGCAACAACATTTCGTGATCTAATTCCTACAAAGCTTGCTGCTGCAGTAT
tgttgat putative branch site (score: 4)
attgtattaagatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtatttcaagatttctaattgttgattcacattgtattaagatatttctgaagcataagtgtgttcgaatttcagGAGCTTCCTTTTGTGCGCTACCGTGCCGCCAAGTTCCTTGATCCAACCACAGCAACAACATTTCGTGATCTAATTCCTACAAAGCTTGCTGCTGCAGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG