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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctttttaagtcagattcatcgcagttgttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC

Basic information

species Vitis vinifera
transcript Vv13s0019g04480.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os04g43750.1 (Oryza sativa), 3'ss of exon 8
gtaattctttttaagtcagattcatcgcagttgttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC
          | || |   | | |    |       | ||   |||| |    |   || | |  || ||    | |   || ||||||| || |||||||||||||||||||| || || ||||||||||||   |||   || ||||| ||||| ||
---------gtaaaatactaattactaaaaggagaatattttctagcattgtta---cagtataaatgat----taaactatttgcagGTGTTTATGATGAACCTTTCTGCTCCCTTTATATGTGAATTCTTCCGTGATGCCCAAGAGAAGGCTCTTCC

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G135132_T01 (Zea mays), 3'ss of exon 8
gtaattctttttaagtcagattcatcgcagt-tgttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC
                 | ||||||   | | ||       || | |    ||       |  |  |||  |   ||    || | ||||| ||| |||||||||| |||||||| ||||||||||| || ||| | |||   || ||||| |  || ||
---------------gtaaattcataataatatgaaaatgccagttgaagttgttgttttagtttgattgaccattc---tattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATCTGTGAGTTTTTCTATGATGCCCAAGAGAAGGTCCTCCC

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G20780.1 (Glycine max), 3'ss of exon 8
gtaattctttttaagtcagattcatcgcagttgttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC
    ||   | | | |   | |   |     ||||||  | |  || |||||  |     ||| |  |  ||         | ||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||  || | | |||| ||| ||
---gttagatatgatttgaacttggcattcctgttttact-agcagtttctgagattagttgttctattcct--------gtatgcagTTCTTCATGATGAACCTTTCTGCCCCATTTATCTGTGAGTTCTTCAAGGATGCACTGAATAAAGTTCTGCC

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G36630.1 (Glycine max), 3'ss of exon 8
gtaattctttttaagtcagattcatcgcagttgttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC
          |||| |  ||||      | ||| ||  ||| ||    |  ||         | | |||| || |   |  | ||||| |||||   ||||||||||||||||| || |||||||| || |||| ||||  ||||||||||||||||||
---------gttaaatatgattag--aaaattgcttctttctattaaatg-gctgtttctgatgctttattttattcct-gtatgcagATCTTCTCAATGAACCTTTCTGCTCCTTTTATCTGTGAGTTTTTCAGGGATGTACAGGAGAAAGCTCTACC

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G06580.1 (Glycine max), 3'ss of exon 8
gtaattctttttaagtcagattcatcgcagttgttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC
    ||   | | | |   | |   |     ||||||  |    || || ||  |   | | | |  | |||         | ||||| ||||||||||||||||||||||||| || || ||||| ||||| |||| |  || ||| |||| ||| ||
---gttagatatgatttgaacttggcattcctgttttact-ggcagtttttgagattaagtattctatttct--------gtatgcagATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC

upper sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G33910.3 (Glycine max), 3'ss of exon 5
gtaattctttttaagtcagattc-atcgcagttgttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC
          |||| |  ||||  |     | || || ||  | ||  | |||   |  |   |  ||| | |||   |     ||||| |||||   |||||||||||||| || || ||||| || || |||| ||||  ||||||||||||||||||
---------gttaaatatgattggaaaattgctgcttcct--attaaatgctgtttctgatactttattttattcctgt----atgcagATCTTCTCAATGAACCTTTCTGCCCCTTTTATCTGCGAGTTTTTCAGGGATGTACAGGAGAAAGCTCTACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418987|gb|EC985176.1|EC985176
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110687648|gb|EE065296.1|EE065296
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110728204|gb|EE103570.1|EE103570
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|351023138|gb|FQ432521.1|FQ432521
EST:     CCCCTGGATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|351023529|gb|FQ432912.1|FQ432912
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|351038074|gb|FQ460816.1|FQ460816
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGGTGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|352794243|gb|FQ479485.1|FQ479485
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|30132011|gb|CB917350.1|CB917350
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCA
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCA
EST: gi|161716356|gb|FC066867.1|FC066867
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAAT
EST: gi|110693709|gb|EE070177.1|EE070177
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|349824265|gb|FQ417652.1|FQ417652
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|352794240|gb|FQ479482.1|FQ479482
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCCGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110391898|gb|EC956929.1|EC956929
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|351028349|gb|FQ427245.1|FQ427245
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110708040|gb|EE085129.1|EE085129
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110399344|gb|EC965847.1|EC965847
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|71865109|gb|DT014164.1|DT014164
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCT
EST: gi|351013485|gb|FQ425516.1|FQ425516
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110703696|gb|EE080770.1|EE080770
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|27581929|gb|CB004624.1|CB004624
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|351026422|gb|FQ428434.1|FQ428434
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110689258|gb|EE065335.1|EE065335
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|71862297|gb|DT011352.1|DT011352
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCCAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGT
EST: gi|30125628|gb|CB910967.1|CB910967
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|351038237|gb|FQ460929.1|FQ460929
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCCGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110685346|gb|EE063661.1|EE063661
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110685881|gb|EE062990.1|EE062990
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|30129600|gb|CB914939.1|CB914939
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|110726165|gb|EE101710.1|EE101710
EST:     CCCCTGAATCAATTCTACTCGTANCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTTCA-GGA
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTT-CAAGGA
EST: gi|110715240|gb|EE093065.1|EE093065
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|30129081|gb|CB914420.1|CB914420
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGAT
EST: gi|110698283|gb|EE075646.1|EE075646
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|46917497|gb|CN546826.1|CN546826
EST:     CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: CCCCTGAATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
EST: gi|32245795|gb|CD711614.1|CD711614
EST:     AATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAG                         GTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT
genomic: AATCAATTCTACTCGTAGCTGAACATGCAGCTGCAAACAATAAGgtaattcttt ... tcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC
                                 ttatcttctcattc  CT-rich tract
                                attatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattctttttaagtcagattcatcgcagttgttttcttcaatagcttctgcaacccaatgtccattatcttctcattcatgtgcagGTCTTCATGATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAGGATCAACAGGAGAAAGCTCTACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA