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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaactctctctctctctctctctctctcacacacacacacacacacacacaaagatgttgaaaattatagaagacagtttcttaagtaccacaaaattaagaaaatacttggttgtgaattgtgatttgcaaaaacattcttcaaatgattattggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTG

Basic information

species Vitis vinifera
transcript Vv13s0019g04190.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04190.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G31980.1 (Glycine max), 3'ss of exon 8
gtgagaactctctctctctctctctctctctcacacacacacacacacacacacaaagatgttgaaaattatagaagacagtttcttaagtaccacaaaattaagaaaatacttggttgtgaattgtgatttgcaaaaacattcttcaaatgattattggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTG
                                                   |       |  | |   | | |  | | | ||| |||  |        ||||   | ||  ||  | ||   ||   |  |  ||||      || | ||  |||||   |  ||||| || || |||||||| ||||| ||||||||||||||| |||||||||||||  ||||||| |||||||| ||||||||| | ||||| ||||| ||||
---------------------------------------------------cttctcagttcttattctaacaccatataattt-ttatttgt------attattcagatttttcat-gtacttttccacatagaaaag-----ttgacattgttatt---tctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTGCAATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTG

upper sequence: Vv13s0019g04190.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G35560.1 (Glycine max), 3'ss of exon 8
gtgagaactctctctctctctctctctctctcacacacacacacacacacacacaaagatgttgaaaattatagaagacagtttcttaagtaccacaaaattaagaaaatacttggttgtgaattgtgatttgca-aaaacattcttcaaatgattattggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTG
                                                           |  | |   | | |  | | | ||| |          |  ||| |||      ||  |  |||| | |  |   || | ||     || | ||  |||||   |  ||||| || || |||||||| ||||| ||||||||||||||  | |||||||||||| ||||||| |||||||| ||||||||| | ||||| ||||| ||||
-----------------------------------------------------tctcagttctcattctaacaccacataatttttat----ttgtattattcaga------tttttcatgaacttt--tccacatagaatgaagttgacattgttatt---tctcagGGTCTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372418|gb|EC936581.1|EC936581
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|30326726|gb|CD009988.1|CD009988
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|156737328|gb|EV241442.1|EV241442
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|32249612|gb|CD715431.1|CD715431
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|32247169|gb|CD712988.1|CD712988
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|110395213|gb|EC960849.1|EC960849
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|29783210|gb|CB349240.2|CB349240
EST:     GGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|30325548|gb|CD008810.1|CD008810
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|110703011|gb|EE079483.1|EE079483
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGA--AATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|32248621|gb|CD714440.1|CD714440
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|156737322|gb|EV241443.1|EV241443
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
EST: gi|30324763|gb|CD008025.1|CD008025
EST:     GAGATTCTGTTGGTGGTGTTGTAACTTGCATTGTGAGGAATGTCCCACGT                         GGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT
genomic: GAGATTCTGTTGGAGGTGTTGTAACTTGCATTGTGAGGAATATCCCACGTgtgagaactc ... tggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttgtgaattgtgatttgcaaaaacattcttcaaatgattattggattgcagGGCCTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTG
                                ttcaaatgattatt  TA-rich tract