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gtaagttcatcctatcacctacatactatgggattctagattagttaaatgcttagaaacttcatcttataagtatttaagtttatttatgtggtttcgaacttgaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAACATGAGGAGAAATTGATCCAGGAACAATCCCAGATGAAATTGTATGCAG
species | Vitis vinifera |
transcript | Vv13s0019g03960.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAG TTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAAEST: gi|30326467|gb|CD009729.1|CD009729
genomic: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAGgtaagttcat ... gaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAA
EST: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGTGCAGAAG TTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAAEST: gi|110726208|gb|EE101788.1|EE101788
genomic: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAGgtaagttcat ... gaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAA
EST: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAG TTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAAEST: gi|30255027|gb|CB971474.1|CB971474
genomic: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAGgtaagttcat ... gaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAA
EST: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAG TTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAAEST: gi|77586923|gb|DV222608.1|DV222608
genomic: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAGgtaagttcat ... gaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAA
EST: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAG TTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAAEST: gi|110727231|gb|EE103758.1|EE103758
genomic: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAGgtaagttcat ... gaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAA
EST: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAG TTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAA
genomic: AGCAGCTTGCTGATCAGTACACTCTTTCAGAACAGCAATTTGCGCAGAAGgtaagttcat ... gaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAA
cttcatcttataagtatttaagtttatttatgtggtttcgaacttgaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAACATGAGGAGAAATTGATCCAGGAACAATCCCAGATGAAATTGTATGCAG
tcttataagtatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcatcctatcacctacatactatgggattctagattagttaaatgcttagaaacttcatcttataagtatttaagtttatttatgtggtttcgaacttgaatgtgcagTTAAAGCAGAAAACACTGGAACTTCAGCTTGCTGATTTGAAAAATCAGCAACATGAGGAGAAATTGATCCAGGAACAATCCCAGATGAAATTGTATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG