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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttgctctctttccttttctttttcattttcattttaggttgatcaaatcttattttgacttcagcttttgatctcaatgtctttaatgtatgatttataaaactaccatattgatagcttgaatgttgattttcactcatgtcagGAAAAATCTATGCCCACTGGACTGAATGGGAGTTTCCAGTTTCGTTCTGGTGCACAAAGTACATTGGCTAAAAGCGGGACTAGAATCAGTAATCTCAGTG

Basic information

species Vitis vinifera
transcript Vv13s0019g03630.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399621|gb|EC966135.1|EC966135
EST:     AACCTTCAAGTCTTCGAATGCCATCCCCAAAGATTGGGTTTTTTGATGTG                         GAAAAATCTATGCCCACTGGACTGAATGGGAGTTTCCAGTTTCGTTCTGGT
genomic: AACCTTCAAGTCTTCGAATGCCATCCCCAAAGATTGGGTTTTTTGATGTGgttagttttt ... ctcatgtcagGAAAAATCTATGCCCACTGGACTGAATGGGAGTTTCCAGTTTCGTTCTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttataaaactaccatattgatagcttgaatgttgattttcactcatgtcagGAAAAATCTATGCCCACTGGACTGAATGGGAGTTTCCAGTTTCGTTCTGGTGCACAAAGTACATTGGCTAAAAGCGGGACTAGAATCAGTAATCTCAGTG
                                       ttttcactc  CT-rich tract
     tataaaacta  TA-rich tract